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Report for CCDS48582.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48582.1 Public Mus musculus 10 Rufy2 23 108 98 CCDS HistoryNCBI Gene:70432Re-query CCDS DB by CCDS ID:48582.1Re-query CCDS DB by GeneID:70432See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48582.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119567.7 ENSMUSP00000113429.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119567.7Link to Ensembl Protein Viewer:ENSMUSP00000113429.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119567Re-query CCDS DB by Protein ID:ENSMUSP00000113429
Original member Current member NCBI NM_027425.4 NP_081701.2 Accepted alive Link to Nucleotide Sequence:NM_027425.4Link to Protein Sequence:NP_081701.2Re-query CCDS DB by Nucleotide ID:NM_027425Re-query CCDS DB by Protein ID:NP_081701Link to BLAST:NP_081701.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081701.2 606 Q8R4C2 606 100% 0 0

Chromosomal Locations for CCDS 48582.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 62980329 62980332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62982671 62982844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62989123 62989240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62990980 62991081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62993117 62993240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62993980 62994041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62994705 62994770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62995310 62995379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62997881 62997982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62998079 62998195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63000233 63000400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63002183 63002280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63004657 63004776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63006625 63006754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63007674 63007768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63009356 63009404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63011418 63011495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63011590 63011733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1821 nt):
ATGGCTACAAAGGACCCCACAGCCGTGGAGAGAGCCAACCTGTTAAACATGGCTAAACTGAGTATCAAAG
GGCTCATCGAGTCTGCCCTGAGCTTCGGCCGCACGCTGGACTCTGACTACCCTCCTCTGCAGCAGTTCTT
CGTGGTCATGGAACATTGTCTGAAACACGGCCTGAAAGGGAGAAAATCATTTTTGAGCTATAACAAAACT
ATTTGGGGCCCCCTGGAACTGGTGGAGAAGCTGTACCCAGAAGCAGAGGAGATCGGGGCGAGTGTCCGGG
ACTTGCCTGGGCTTAAGACTCCGCTTGGCCGTGCTAGAGCGTGGCTCCGATTAGCCCTCATGCAGAAAAA
AATGGCCGATTACTTGCGTTGCTTAATTATCCAGAGGGAGCTCCTAAGTGAGTTCTATGAGTACCATGCA
CTGATGATGGAGGAGGAGGGAGCCGTGATTGTCGGGCTGCTGGTCGGCTTGAACGTGATTGATGCCAATC
TGTGTGTGAAGGGAGAGGACCTAGACTCCCAGGTTGGGGTGATTGACTTCTCCATGTACTTAAAGAATGA
AGAAGAGATCGGAAACAAGGAAAGGAACGTTCAAATCGCCGCCATCTTAGACCAAAAGAATTATGTTGAA
GAGCTAAACAGACAACTCAACAGCACAGTCAGCAGCCTCCATTCAAGAGTGGACTCGTTAGAAAAGTCAA
ACACTAAGCTGATCGAAGAGTTAGCAATAGCGAAGAATAATATCATAAAGCTCCAAGAAGAAAACCATCA
ATTGCGTAGTGAAAATGAGCTGATCTTAATGAGAACTCGGCAGCACCTGGAGGTTACCAAAGTGGATGTA
GAAACGGAGCTTCAAACATACAAGCATTCCCGGCAAGGCCTAGACGAGATGTATAACGATGCCAGGAGGC
AGCTTCGAGACGAGTCGCAGCTCCGACAGGATGTGGAGAATGAGCTATCAGTACAAGTTGGCATGAAGCA
TGAGATGGAGCTGGCCATGAAGCTGTTGGAGAAAGACATTCACGAGAAACAAGACACTCTCATAGGCCTT
CGGCAACAGCTGGAAGAAGTCAAAGCAATCAACATTGAGATGTATCAAAGGCTGCAGGGCTCTGAAGATG
GCTTGAAAGAAAAAAATGAAATAATTGCCCGACTAGAAGAAAAGACCAATAAGATCACTACAGCCATGAG
GCAGCTGGAGCAAAGATTGCAGCAAGCAGAGAAGGCGCAAAAGGAAGCAGAAGCCGAGGATGAGAAATAT
GCCCAGGAGTGTCTGAGCCAATCCGACAGTCTGCAGAGACAGATCTCGCAGAAGGAGCAACAGCTGGTGC
AGCTGGAAACGGACTTGAAGATCGAGAAGGAATGGAGACAGACTTTGCAAGAAGATCTTCAAAAGGAAAA
AGATGTCCTATCTCATCTTAGACATGAAACCCAAAAAGTCATAAGTCTTAAAAAAGAGTTTCTTAACCTC
CAGGATGAAAATCAGCAGTTGAAAAGGATTTATCAGGAACAAGAACAAGCTCTGCAAGAACTTGGCAGCA
AACTCTGCGAATCGAAACTTAAAATAGACGATATAAAAGAAGCCAACAAAGCACTACAGGGACTGGTCTG
GTTAAAAGACAAAGATGCAACCCACTGTAAGCTTTGTGAGAAGGAATTTTCACTCTCCAAAAGAAAGCAC
CACTGTAGAAACTGCGGAGAAATTTTCTGTAATGCCTGCTCTGACAACGAGCTGCCTTTGCCTTCTTCAC
CAAAGCCAGTGCGAGTCTGTGATTCCTGCCATGCAATGCTCATTCAGAGATGCTCCTCTAACATGCCATG
A

Translation (606 aa):
MATKDPTAVERANLLNMAKLSIKGLIESALSFGRTLDSDYPPLQQFFVVMEHCLKHGLKGRKSFLSYNKT
IWGPLELVEKLYPEAEEIGASVRDLPGLKTPLGRARAWLRLALMQKKMADYLRCLIIQRELLSEFYEYHA
LMMEEEGAVIVGLLVGLNVIDANLCVKGEDLDSQVGVIDFSMYLKNEEEIGNKERNVQIAAILDQKNYVE
ELNRQLNSTVSSLHSRVDSLEKSNTKLIEELAIAKNNIIKLQEENHQLRSENELILMRTRQHLEVTKVDV
ETELQTYKHSRQGLDEMYNDARRQLRDESQLRQDVENELSVQVGMKHEMELAMKLLEKDIHEKQDTLIGL
RQQLEEVKAINIEMYQRLQGSEDGLKEKNEIIARLEEKTNKITTAMRQLEQRLQQAEKAQKEAEAEDEKY
AQECLSQSDSLQRQISQKEQQLVQLETDLKIEKEWRQTLQEDLQKEKDVLSHLRHETQKVISLKKEFLNL
QDENQQLKRIYQEQEQALQELGSKLCESKLKIDDIKEANKALQGLVWLKDKDATHCKLCEKEFSLSKRKH
HCRNCGEIFCNACSDNELPLPSSPKPVRVCDSCHAMLIQRCSSNMP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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