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Report for CCDS1367.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1367.1 Public Homo sapiens 1 SWT1 24 110 108 CCDS HistoryNCBI Gene:54823Re-query CCDS DB by CCDS ID:1367.1Re-query CCDS DB by GeneID:54823See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1367.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367500.9 ENSP00000356470.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367500.9Link to Ensembl Protein Viewer:ENSP00000356470.4Re-query CCDS DB by Nucleotide ID:ENST00000367500Re-query CCDS DB by Protein ID:ENSP00000356470
Original member Current member EBI ENST00000367501.7 ENSP00000356471.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367501.7Link to Ensembl Protein Viewer:ENSP00000356471.3Re-query CCDS DB by Nucleotide ID:ENST00000367501Re-query CCDS DB by Protein ID:ENSP00000356471
Original member Current member NCBI NM_001105518.2 NP_001098988.1 Accepted alive Link to Nucleotide Sequence:NM_001105518.2Link to Protein Sequence:NP_001098988.1Re-query CCDS DB by Nucleotide ID:NM_001105518Re-query CCDS DB by Protein ID:NP_001098988Link to BLAST:NP_001098988.1
Original member Current member NCBI NM_017673.7 NP_060143.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017673.7Link to Protein Sequence:NP_060143.4Re-query CCDS DB by Nucleotide ID:NM_017673Re-query CCDS DB by Protein ID:NP_060143Link to BLAST:NP_060143.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001098988.1 900 Q5T5J6 900 100% 0 0
NP_060143.4 900 Q5T5J6 900 100% 0 0

Chromosomal Locations for CCDS 1367.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 185160842 185160925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185166572 185166652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185168340 185168398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185174372 185175113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185180391 185180450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185181946 185182057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185184243 185184344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185184743 185184931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185190549 185190642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185202654 185202799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185204700 185204863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185206625 185206763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185214507 185214655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185221849 185222036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185231577 185231708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185271323 185271389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185276604 185276668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185290674 185290803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2703 nt):
ATGTCCAGCAAAGAATCCTGTGGGAAAAAAGAGACATCTCAGAGGAAAGACACCACCACCTCATCACCCA
ATTTTGGTGAAAAAGACAAGAAAGAGAGAAAAACCCCAGCAAGTTCTACTAGTTCATCTTCTATAAGATC
AGTTTCATCAGAAAAGAGAAAACTGAAATCAGATCATACAGATGTTCTGTACTATAATATAAAAAGAAGA
CAAGGACTGAAAAGATTGAGTGTAGAAATTGACACTCTCAGAAGGAGACCAAAAATCGGTTCTTCATCCC
AAAGACCTATTAAACTCAAAGAAGCATCATATTCAAATGATAATCAAATTATTTTGCAGAGTCCTTCTTC
AAATGGAACTAAAAAAGACATACATAAATGTGTAGACTTTAAACCTAAAGATATCAAATTGACAAATGCT
GGGAGCAAGCTTGACCATGGAATTAAAAGCCTTAGTAGTCCTAAGATTGCCAGTGATGTGAAACCTAAAG
CCGAAGGCCAGGCAAGTGAAAATAAATGGTCTCATTTACTTGTTCAGAGAGAGAAGATGAAAGAACTCAA
GAAAGGAAGAAACAGTAAATTTAGAGACAATTCTGAAAAATGTGTCTTAGAGAAATGGAAGAGAAATCAA
TTTTCTCAGGATTATAACTCCAACAAGATAATTAAGGAACCCTTGGGATCTAGAAGACAGAAGATCAGTT
TCAAAATCCCTATAAAATCCCGTGACACCCTCCAGAAACTTGTAGAAGAAAATGTCTTCAACATAGATTC
TAATAATTCGAAGACTAAGCAGGAAGAAAGAGAATACCTGGAAAGCTCCCAGGTTTCATTAAATGTGACT
AGGCAGAAAACTGAACATTTACTTTCAGATTTTACATATAAGCGGACTGTTCATGAGTGGAAACGAAAAC
ATCATTATGACCATCAAGAAAGTAATGATTCACATTCTAGGGAAAACCTAACCCAGAGTTTTGAAGCACC
ATGTTGTTCCGTGTCATCTGAAAGTATCCAGGATGCAGATCAAGAGATGCAGATAGTAGAAGAGCTTCAT
GCTGCACGTGTGGGAAAAAGTGTGGATTTACCTGGAGAGTTAATGAGTATGGAAATTGACTTAGAAGATG
ATGTACATTCCTCCTCTGCAAATAATACTTCAGACAGAAAGCTTCTAATTGTTATTGACACAAATATTCT
GATGAATCATCTCAAATTTGTTAGAATTTTGAAGACAACAGAAGTACCAGGTTTTGACAAACTTGTGTTA
ATAATTCCCTGGGTCGTTATGCAAGAGCTAGATCGTATGAAGGAAGGAAAACTACTAAAACGTGCCCAGC
ACAAAGCTATACCTGCAGTTCATTTCATCAACGACAGTCTCAAAAATCAAGATAGAAAGCTATGGGGTCA
GTCAATACAACTTGCATCCCAAAAACATTATGGATTGAGTGATGAGAACAATGATGATCGAGTACTAAAA
TGCTGTCTCCAGCACCAGGAATTATTCCCTTGTTCTTTTGTTATTCTGTGCACGGATGATAGAAACTTAA
GAAACAAAGGCCTAATAAGTGGTGTGAAGTCACTCAGTAAAGAAGAATTGAGTGCAGAGTTATTACACTT
ATCTCTGAACACAGATGTGTGTCATCAGCCTTGTATTCCTAAGCAACAGTTGAAAGCAGAAACAACACCC
TTGAAAGAGAGCTATAAGGAGGAATCTACAAATTCTGGACTGTCCATTCTGCTTGAGAGCATTGTATCTG
ATCTTGAAAAATCTCTTGGAACAGGTTTATCTTCAATATTAGAAACAGAAATGAAAATTGCTTTTGGAAA
CCTTTGGATGGAGATCCTGTACCTGAAACCACCATGGACTCTACTACATTTACTACAGTGCTTTAAAAAA
CATTGGTTGGCTGTATTTGGATTAGTTATGGAAAAGAACTTGCTTTTAACTATTGAGAGCCTATACAAAA
ATCTCCGTAAAGCTAATAAGGCAGTGGATTTTACAACAGTCAAATTCTTGCTTCAGGATTCTAGAAGTTT
GTTACATGCTTTCAGTACAAGGTCAAATTATGATGGTATTCTTCCACAGACCTTTGCTCAAGTAAACAAC
CTCCTTCAGACATTTGCAGAGGTCAAGACAAAACTTAAGCCAAATTCTTCAGAAAACACAGTGACTAAAA
AGCAGGAAGGTACTTCATTGAAGAATTCTCATAATCAAGAAATCACTGTTTTCTCGAGTTCTCATCTTCC
CCAACCCAGCAGGCATCAAGAAATCTGGTCTATCCTAGAGAGTGTTTGGATTACAATATATCAGAACAGC
ACGGATGTATTTCAAAGATTGGGCTCAAATTCAGCTCTGACTACTTCAAATATAGCATCATTTGAAGAAG
CATTTATATGTCTTCAAAAGTTAATGGCAGCTGTGAGGGATATTCTTGAAGGAATTCAAAGGATTTTGGC
CCCAAACAGTAATTATCAAGATGTTGAGACCCTCTATAACTTCCTAATCAAGTATGAGGTAAATAAAAAT
GTCAAATTTACTGCCCAGGAAATTTATGATTGTGTTTCTCAGACTGAGTATAGGGAAAAGTTAACCATTG
GATGCCGCCAGCTGGTTGAGATGGAATATACCATGCAGCAGTGCAATGCATCTGTTTATATGGAGGCCAA
AAACAGGGGATGGTGTGAAGACATGCTCAACTATAGGATATAA

Translation (900 aa):
MSSKESCGKKETSQRKDTTTSSPNFGEKDKKERKTPASSTSSSSIRSVSSEKRKLKSDHTDVLYYNIKRR
QGLKRLSVEIDTLRRRPKIGSSSQRPIKLKEASYSNDNQIILQSPSSNGTKKDIHKCVDFKPKDIKLTNA
GSKLDHGIKSLSSPKIASDVKPKAEGQASENKWSHLLVQREKMKELKKGRNSKFRDNSEKCVLEKWKRNQ
FSQDYNSNKIIKEPLGSRRQKISFKIPIKSRDTLQKLVEENVFNIDSNNSKTKQEEREYLESSQVSLNVT
RQKTEHLLSDFTYKRTVHEWKRKHHYDHQESNDSHSRENLTQSFEAPCCSVSSESIQDADQEMQIVEELH
AARVGKSVDLPGELMSMEIDLEDDVHSSSANNTSDRKLLIVIDTNILMNHLKFVRILKTTEVPGFDKLVL
IIPWVVMQELDRMKEGKLLKRAQHKAIPAVHFINDSLKNQDRKLWGQSIQLASQKHYGLSDENNDDRVLK
CCLQHQELFPCSFVILCTDDRNLRNKGLISGVKSLSKEELSAELLHLSLNTDVCHQPCIPKQQLKAETTP
LKESYKEESTNSGLSILLESIVSDLEKSLGTGLSSILETEMKIAFGNLWMEILYLKPPWTLLHLLQCFKK
HWLAVFGLVMEKNLLLTIESLYKNLRKANKAVDFTTVKFLLQDSRSLLHAFSTRSNYDGILPQTFAQVNN
LLQTFAEVKTKLKPNSSENTVTKKQEGTSLKNSHNQEITVFSSSHLPQPSRHQEIWSILESVWITIYQNS
TDVFQRLGSNSALTTSNIASFEEAFICLQKLMAAVRDILEGIQRILAPNSNYQDVETLYNFLIKYEVNKN
VKFTAQEIYDCVSQTEYREKLTIGCRQLVEMEYTMQQCNASVYMEAKNRGWCEDMLNYRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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