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Report for CCDS35641.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35641.1 Public Mus musculus 1 Itm2c 23 108 98 CCDS HistoryNCBI Gene:64294Re-query CCDS DB by CCDS ID:35641.1Re-query CCDS DB by GeneID:64294See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35641.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027425.15 ENSMUSP00000027425.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027425.15Link to Ensembl Protein Viewer:ENSMUSP00000027425.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000027425Re-query CCDS DB by Protein ID:ENSMUSP00000027425
Original member Current member NCBI NM_022417.3 NP_071862.2 Accepted alive Link to Nucleotide Sequence:NM_022417.3Link to Protein Sequence:NP_071862.2Re-query CCDS DB by Nucleotide ID:NM_022417Re-query CCDS DB by Protein ID:NP_071862Link to BLAST:NP_071862.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071862.2 269 Q91VK4 269 100% 0 0

Chromosomal Locations for CCDS 35641.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 85894664 85894789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85903010 85903150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85905214 85905402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85906422 85906532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85907008 85907158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85907547 85907638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (810 nt):
ATGGTGAAGATCAGTTTCCAGCCCGCGGTAGCGGGCATCAAGGCTGATAAAGCGGACAAAGCAGCGGCGT
CTGGTCCGGCCTCGGCATCTGCCCCGGCCGCGGAGATCCTGCTGACGCCGGCGAGGGAGGAACGCCCCCC
TCGCCACCGCTCCCGGAAAGGAGGCTCCGTGGGCGGCGTGTGCTACCTGTCCATGGGCATGGTTGTATTG
CTCATGGGCCTTGTGTTTGCCTCGGTCTACATCTACAGGTACTTCTTCCTTGCTCAGCTGGCCCGAGATA
ACTTCTTCCACTGTGGTGTGCTCTACGAAGACTCCCTGTCCTCCCAGATCCGGACTCGCCTGGAGCTGGA
AGAGGATGTGAAGATCTATCTTGAGGAGAACTATGAACGTATTAATGTCCCTGTGCCCCAGTTTGGTGGT
GGGGACCCTGCAGACATCATCCATGACTTCCAGCGGGGTCTCACTGCCTACCACGACATCTCCCTAGACA
AGTGCTACGTCATCGAGCTCAACACCACCATCGTGCTACCCCCACGAAACTTCTGGGAGCTCCTCATGAA
CGTGAAGAGAGGGACCTACCTCCCACAGACGTACATCATCCAGGAGGAGATGGTGGTGACAGAGCATGTC
CGCGACAAGGAGGCTCTGGGTTCCTTCATCTACCACCTGTGCAACGGGAAGGACACCTACCGGCTGCGGC
GCCGGTCTACCCGGAGGCGGATCAACAAACGTGGGGGCAAGAACTGCAACGCCATCCGCCACTTCGAGAA
TACATTTGTGGTGGAGACGCTCATCTGTGGGGTGGTGTGA

Translation (269 aa):
MVKISFQPAVAGIKADKADKAAASGPASASAPAAEILLTPAREERPPRHRSRKGGSVGGVCYLSMGMVVL
LMGLVFASVYIYRYFFLAQLARDNFFHCGVLYEDSLSSQIRTRLELEEDVKIYLEENYERINVPVPQFGG
GDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFWELLMNVKRGTYLPQTYIIQEEMVVTEHV
RDKEALGSFIYHLCNGKDTYRLRRRSTRRRINKRGGKNCNAIRHFENTFVVETLICGVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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