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Report for CCDS27616.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27616.1 Public Mus musculus 15 Il2rb 23 108 98 CCDS HistoryNCBI Gene:16185Re-query CCDS DB by CCDS ID:27616.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27616.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089398.8 ENSMUSP00000086820.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089398.8Link to Ensembl Protein Viewer:ENSMUSP00000086820.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000089398Re-query CCDS DB by Protein ID:ENSMUSP00000086820
Original member Current member EBI ENSMUST00000163494.2 ENSMUSP00000127006.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163494.2Link to Ensembl Protein Viewer:ENSMUSP00000127006.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163494Re-query CCDS DB by Protein ID:ENSMUSP00000127006
Original member Current member NCBI NM_008368.4 NP_032394.1 Accepted alive Link to Nucleotide Sequence:NM_008368.4Link to Protein Sequence:NP_032394.1Re-query CCDS DB by Nucleotide ID:NM_008368Re-query CCDS DB by Protein ID:NP_032394Link to BLAST:NP_032394.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032394.1 539 P16297 539 100% 0 0

Chromosomal Locations for CCDS 27616.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 78481476 78482183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78483936 78484020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78484923 78485043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78485732 78485897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78486374 78486522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78488125 78488230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78490182 78490263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78490865 78490979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78491762 78491849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1620 nt):
ATGGCTACCATAGCTCTTCCCTGGAGCCTGTCCCTCTACGTCTTCCTCCTGCTCCTGGCTACACCTTGGG
CATCTGCAGCAGTGAAAAACTGTTCCCATCTTGAATGCTTCTACAACTCAAGAGCCAATGTCTCTTGCAT
GTGGAGCCATGAAGAGGCTCTGAATGTCACAACCTGCCACGTCCATGCCAAGTCGAACCTGCGACACTGG
AACAAAACCTGTGAGCTAACTCTTGTGAGGCAGGCATCCTGGGCCTGCAACCTGATCCTCGGGTCGTTCC
CAGAGTCCCAGTCACTGACCTCCGTGGACCTCCTTGACATAAATGTGGTGTGCTGGGAAGAGAAGGGTTG
GCGTAGGGTAAAGACCTGCGACTTCCATCCCTTTGACAACCTTCGCCTGGTGGCCCCTCATTCCCTCCAA
GTTCTGCACATTGATACCCAGAGATGTAACATAAGCTGGAAGGTCTCCCAGGTCTCTCACTACATTGAAC
CATACTTGGAATTTGAGGCCCGTAGACGTCTTCTGGGCCACAGCTGGGAGGATGCATCCGTATTAAGCCT
CAAGCAGAGACAGCAGTGGCTCTTCTTGGAGATGCTGATCCCTAGTACCTCATATGAGGTCCAGGTGAGG
GTCAAAGCTCAACGAAACAATACCGGGACCTGGAGTCCCTGGAGCCAGCCCCTGACCTTTCGGACAAGGC
CAGCAGATCCCATGAAGGAGATCCTCCCCATGTCATGGCTCAGATACCTTCTGCTGGTCCTTGGTTGTTT
TTCTGGCTTCTTCTCCTGCGTCTACATTTTGGTCAAGTGCCGGTACCTTGGGCCATGGCTGAAGACAGTT
CTCAAGTGCCACATCCCAGATCCTTCTGAGTTCTTCTCCCAGCTGAGCTCCCAGCATGGGGGAGACCTTC
AGAAATGGCTCTCCTCGCCTGTCCCCTTGTCCTTCTTCAGCCCCAGTGGCCCTGCCCCTGAGATCTCTCC
GCTGGAAGTGCTCGACGGAGATTCCAAGGCCGTGCAGCTGCTCCTGTTACAGAAGGACTCTGCCCCTTTA
CCCTCGCCCAGCGGCCACTCACAGGCCAGCTGCTTCACCAACCAGGGCTACTTCTTCTTCCATCTGCCCA
ATGCCTTGGAGATCGAATCCTGCCAGGTGTACTTCACCTATGACCCCTGTGTGGAAGAGGAGGTGGAGGA
GGATGGGTCAAGGCTGCCCGAGGGATCTCCCCACCCACCTCTGCTGCCTCTGGCTGGAGAACAGGATGAC
TACTGTGCCTTCCCGCCCAGGGATGACCTGCTGCTCTTCTCCCCGAGCCTCAGCACCCCCAACACTGCCT
ATGGGGGCAGCAGAGCCCCTGAAGAAAGATCTCCACTCTCCCTGCATGAGGGACTTCCCTCCCTAGCATC
CCGTGACCTGATGGGCTTACAGCGCCCTCTGGAGCGGATGCCGGAAGGTGATGGAGAGGGGCTGTCTGCC
AATAGCTCTGGGGAGCAGGCCAGTGTCCCAGAAGGCAACCTTCATGGGCAAGATCAGGACAGAGGCCAGG
GCCCCATCCTGACCCTGAACACCGATGCCTATCTGTCTCTTCAAGAACTACAGGCCCAAGATTCAGTCCA
CCTAATATAG

Translation (539 aa):
MATIALPWSLSLYVFLLLLATPWASAAVKNCSHLECFYNSRANVSCMWSHEEALNVTTCHVHAKSNLRHW
NKTCELTLVRQASWACNLILGSFPESQSLTSVDLLDINVVCWEEKGWRRVKTCDFHPFDNLRLVAPHSLQ
VLHIDTQRCNISWKVSQVSHYIEPYLEFEARRRLLGHSWEDASVLSLKQRQQWLFLEMLIPSTSYEVQVR
VKAQRNNTGTWSPWSQPLTFRTRPADPMKEILPMSWLRYLLLVLGCFSGFFSCVYILVKCRYLGPWLKTV
LKCHIPDPSEFFSQLSSQHGGDLQKWLSSPVPLSFFSPSGPAPEISPLEVLDGDSKAVQLLLLQKDSAPL
PSPSGHSQASCFTNQGYFFFHLPNALEIESCQVYFTYDPCVEEEVEEDGSRLPEGSPHPPLLPLAGEQDD
YCAFPPRDDLLLFSPSLSTPNTAYGGSRAPEERSPLSLHEGLPSLASRDLMGLQRPLERMPEGDGEGLSA
NSSGEQASVPEGNLHGQDQDRGQGPILTLNTDAYLSLQELQAQDSVHLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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