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Report for CCDS25316.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25316.1 Public Mus musculus 11 Kpnb1 23 108 98 CCDS HistoryNCBI Gene:16211Re-query CCDS DB by CCDS ID:25316.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25316.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001479.4 ENSMUSP00000001479.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001479.4Link to Ensembl Protein Viewer:ENSMUSP00000001479.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000001479Re-query CCDS DB by Protein ID:ENSMUSP00000001479
Original member Current member NCBI NM_008379.3 NP_032405.3 Accepted alive Link to Nucleotide Sequence:NM_008379.3Link to Protein Sequence:NP_032405.3Re-query CCDS DB by Nucleotide ID:NM_008379Re-query CCDS DB by Protein ID:NP_032405Link to BLAST:NP_032405.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032405.3 876 P70168 876 100% 0 0

Chromosomal Locations for CCDS 25316.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 97162681 97162681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97163353 97163514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97163914 97164028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97164725 97164830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97164953 97165096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97165376 97165483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97166047 97166129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97167550 97167694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97168865 97168936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97169148 97169295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97169902 97170032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97171522 97171713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97173053 97173277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97175749 97175850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97177246 97177356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97178270 97178359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97178868 97178927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97180444 97180596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97181625 97181825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97184927 97185109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97187389 97187447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97187546 97187585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2631 nt):
ATGGAGCTCATAACCATCCTCGAGAAGACCGTGTCTCCGGATCGGCTGGAGCTGGAAGCGGCGCAGAAGT
TCCTCGAGCGTGCGGCCGTGGAGAATCTGCCCACGTTCCTTGTGGAACTGTCCAGAGTGCTGGCAAACCC
AGGAAACAGTCAGGTTGCCAGAGTTGCAGCTGGTCTACAAATTAAGAACTCTTTGACATCGAAAGATCCA
GATATCAAGGCACAATACCAGCAGAGGTGGCTCGCTATTGATGCTAATGCTCGACGGGAAGTCAAGAACT
ATGTTTTGCAGACGTTGGGCACAGAAACGTACCGGCCTAGTTCGGCCTCACAGTGTGTGGCTGGTATTGC
TTGTGCAGAGATCCCAGTAAGCCAGTGGCCAGAGCTAATTCCTCAGCTGGTAGCCAATGTCACAAACCCC
AACAGCACAGAGCATATGAAAGAGTCCACATTGGAAGCTATTGGTTACATTTGCCAAGATATAGACCCAG
AGCAGCTACAGGATAAGTCCAATGAGATCCTGACTGCCATAATCCAGGGGATGAGGAAGGAGGAGCCTAG
TAACAATGTGAAGCTGGCTGCTACCAATGCACTCCTGAACTCACTAGAGTTCACCAAAGCAAACTTTGAC
AAAGAGTCTGAAAGGCACTTTATCATGCAAGTGGTCTGTGAAGCCACACAGTGTCCAGACACAAGGGTAA
GAGTGGCTGCTTTACAGAATCTAGTGAAGATAATGTCCTTGTATTACCAGTACATGGAGACATACATGGG
TCCTGCCCTTTTTGCAATCACAATTGAAGCAATGAAAAGTGACATTGATGAGGTGGCTCTCCAAGGGATA
GAGTTCTGGTCCAATGTCTGTGATGAGGAAATGGATTTGGCCATTGAGGCTTCAGAGGCAGCAGAGCAAG
GACGCCCCCCGGAGCACACCAGCAAATTTTACGCCAAGGGAGCACTGCAGTACTTGGTGCCCATCCTCAC
ACAGACACTGACTAAACAGGATGAAAACGATGACGACGATGACTGGAACCCTTGCAAAGCAGCTGGGGTG
TGCCTCATGCTCCTGTCCACCTGCTGTGAAGATGACATTGTGCCGCATGTCCTTCCCTTTATTAAAGAGC
ACATCAAGAACCCTGACTGGCGATACCGGGATGCAGCAGTGATGGCTTTTGGCAGTATCTTGGAAGGACC
AGAGCCTAATCAACTGAAACCATTAGTCATACAGGCTATGCCCACCCTAATAGAACTAATGAAAGACCCC
AGTGTAGTTGTTCGAGACACAACAGCGTGGACTGTGGGCAGGATCTGTGAGCTGCTGCCTGAAGCCGCCA
TCAACGATGTCTACCTGGCACCCCTTTTACAGTGTCTGATTGAGGGCCTCAGTGCTGAGCCCAGGGTGGC
TTCAAATGTGTGCTGGGCTTTTTCCAGTCTGGCTGAAGCTGCGTATGAAGCTGCAGATGTAGCTGATGAT
CAAGAAGAACCAGCCACCTATTGTCTGTCTTCTTCCTTTGAACTTATAGTTCAGAAGCTATTGGAGACCA
CCGACAGACCCGATGGACACCAGAATAACCTGAGAAGCTCTGCGTATGAGTCTCTCATGGAAATCGTAAA
GAACAGTGCCAAGGATTGTTACCCTGCCGTGCAGAAGACCACCCTGGTCATTATGGAACGGCTGCAGCAG
GTGCTTCAGATGGAGTCCCATATCCAGAGCACATCCGACAGAATCCAGTTCAATGACCTCCAGTCTCTAC
TCTGCGCGACTCTTCAGAATGTTCTCCGGAAAGTGCAGCATCAAGATGCTCTGCAGATCTCTGATGTGGT
CATGGCCTCCCTGTTAAGGATGTTCCAAAGCACAGCTGGGTCTGGGGGAGTGCAAGAAGATGCCCTGATG
GCAGTTAGCACACTGGTGGAAGTGTTGGGTGGTGAATTCCTCAAGTACATGGAGGCCTTTAAACCATTCC
TGGGCATTGGACTGAAAAATTATGCTGAGTACCAGGTATGTTTGGCAGCTGTTGGCTTAGTTGGAGACTT
GTGCCGAGCCCTGCAGTCTAACATCTTGCCTTTCTGTGACGAGGTGATGCAGCTGCTCCTGGAGAACTTG
GGGAATGAGAATGTCCACAGGTCTGTGAAGCCACAGATTCTGTCTGTGTTTGGTGATATTGCTCTTGCCA
TTGGTGGAGAGTTTAAAAAATACTTAGAGGTTGTATTGAATACTCTACAGCAGGCCTCCCAAGCCCAGGT
TGACAAGTCAGACTTTGACATGGTGGATTATCTGAATGAGCTAAGAGAAAGCTGCTTGGAAGCTTATACG
GGAATCGTCCAGGGATTGAAGGGAGATCAGGAAAACGTACACCCGGATGTAATGCTGGTACAGCCCAGAG
TAGAATTTATTTTGTCTTTTATTGATCACATTGCTGGAGATGAGGATCATACGGACGGAGTGGTAGCCTG
TGCTGCTGGTCTGATAGGGGACTTGTGTACAGCCTTCGGGAAGGATGTACTGAAGTTAGTAGAAGCTAGG
CCAATGATCCATGAACTATTAACTGAAGGGCGGAGATCGAAGACTAACAAAGCAAAGACCCTCGCTACGT
GGGCAACCAAGGAACTGAGGAAACTGAAGAACCAGGCTTGA

Translation (876 aa):
MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDP
DIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVSQWPELIPQLVANVTNP
NSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFD
KESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGI
EFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGV
CLMLLSTCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGSILEGPEPNQLKPLVIQAMPTLIELMKDP
SVVVRDTTAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADD
QEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQ
VLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALM
AVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNILPFCDEVMQLLLENL
GNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDFDMVDYLNELRESCLEAYT
GIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEAR
PMIHELLTEGRRSKTNKAKTLATWATKELRKLKNQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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