NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS92005.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92005.1 Public Homo sapiens 15 RFX7 24 110 108 CCDS HistoryNCBI Gene:64864Re-query CCDS DB by CCDS ID:92005.1Re-query CCDS DB by GeneID:64864See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92005.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000559447.8 ENSP00000453281.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000559447.8Link to Ensembl Protein Viewer:ENSP00000453281.3Re-query CCDS DB by Nucleotide ID:ENST00000559447Re-query CCDS DB by Protein ID:ENSP00000453281
Original member Current member NCBI NM_001370561.1 NP_001357490.1 Accepted alive Link to Nucleotide Sequence:NM_001370561.1Link to Protein Sequence:NP_001357490.1Re-query CCDS DB by Nucleotide ID:NM_001370561Re-query CCDS DB by Protein ID:NP_001357490Link to BLAST:NP_001357490.1
Original member Current member NCBI NM_022841.7 NP_073752.6 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022841.7Link to Protein Sequence:NP_073752.6Re-query CCDS DB by Nucleotide ID:NM_022841Re-query CCDS DB by Protein ID:NP_073752Link to BLAST:NP_073752.6

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001357490.1 1460 Q2KHR2-3 1460 100% 0 0
NP_073752.6 1460 Q2KHR2-3 1460 100% 0 0

Chromosomal Locations for CCDS 92005.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 56093345 56096620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56098081 56098376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56101359 56101566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56102169 56102253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56103554 56103670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56142778 56142900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56144401 56144483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56179270 56179303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56243125 56243285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4383 nt):
ATGGCAGAGGAACAACAACAGCCGCCACCACAGCAGCCTGATGCCCATCAGCAGCTTCCCCCCAGCGCCC
CCAACTCGGGGGTGGCCCTGCCAGCCCTTGTGCCCGGGCTGCCAGGGACAGAGGCCAGCGCGCTGCAACA
CAAGATCAAGAACTCCATCTGCAAAACTGTACAATCTAAAGTGGACTGCATTTTGCAAGAAGTTGAGAAG
TTTACAGACCTAGAGAAACTCTACCTCTACCTTCAGCTGCCTTCTGGTCTCAGCAATGGAGAGAAAAGTG
ATCAGAATGCCATGTCATCTAGTCGGGCACAACAAATGCATGCCTTTTCCTGGATTCGGAATACCCTAGA
GGAACATCCGGAGACTTCACTGCCCAAACAGGAAGTCTATGATGAGTACAAGAGCTATTGTGACAATCTT
GGTTACCATCCATTAAGTGCTGCTGATTTTGGAAAGATCATGAAAAACGTCTTTCCAAACATGAAGGCAC
GTCGTTTGGGCACAAGAGGCAAATCTAAATATTGCTACAGTGGACTAAGAAAAAAAGCTTTTGTTCATAT
GCCAACACTGCCCAACCTTGACTTTCACAAAACTGGAGATGGGTTGGAAGGAGCTGAACCTTCTGGGCAG
CTTCAAAATATTGATGAAGAAGTTATCTCTTCTGCTTGCCGTCTTGTGTGTGAGTGGGCCCAGAAAGTGT
TAAGCCAACCATTTGACACCGTCTTGGAATTAGCCCGCTTCCTTGTAAAAAGTCACTATATAGGCACCAA
GTCAATGGCAGCTCTAACTGTAATGGCAGCAGCACCAGCAGGAATGAAAGGAATTACCCAGCCTTCTGCT
TTTATACCTACAGCTGAAAGTAATTCCTTTCAGCCTCAGGTGAAGACTTTGCCATCTCCAATTGATGCTA
AACAGCAGTTGCAACGGAAAATCCAGAAGAAGCAGCAAGAACAGAAACTACAATCCCCTTTGCCAGGAGA
ATCTGCAGCAAAAAAGTCAGAAAGTGCTACAAGCAATGGAGTGACTAATCTTCCTAATGGAAATCCTTCA
ATCCTTTCTCCTCAACCTATTGGTATCGTTGTGGCAGCTGTCCCTAGTCCCATTCCGGTCCAGCGGACTA
GGCAATTGGTAACTTCACCGAGTCCAATGAGTTCTTCTGACGGCAAAGTTCTTCCCCTCAATGTACAGGT
GGTCACTCAGCACATGCAGTCTGTGAAACAGGCACCAAAGACTCCCCAGAACGTTCCAGCCAGTCCTGGT
GGGGATCGTTCTGCCCGGCACCGTTACCCTCAGATCTTACCCAAACCAGCGAACACCAGTGCACTCACCA
TTCGCTCTCCAACTACTGTCCTCTTTACTAGTAGTCCCATCAAAACTGCTGTTGTACCCGCTTCACACAT
GAGTTCTCTAAATGTGGTGAAAATGACAACAATATCCCTCACACCCAGCAACAGTAACACCCCTCTTAAA
CATTCTGCCTCAGTCAGCAGTGCTACAGGAACAACAGAAGAATCAAGGAGTGTTCCACAGATCAAGAATG
GTTCTGTCGTGTCGCTTCAGTCTCCTGGGTCCAGGAGCAGCAGTGCGGGGGGAACATCTGCTGTGGAAGT
CAAAGTGGAACCCGAAACATCATCAGATGAGCATCCTGTACAGTGCCAAGAGAACTCTGATGAGGCTAAA
GCTCCCCAGACACCTAGTGCCCTTTTGGGGCAGAAAAGTAATACAGACGGAGCACTGCAGAAACCTTCAA
ATGAAGGTGTCATTGAAATAAAAGCAACTAAGGTCTGTGACCAGAGGACCAAATGTAAAAGTCGCTGTAA
TGAAATGCTGCCAGGCACGTCAACAGGCAATAATCAAAGCACTATCACTCTATCAGTTGCTTCTCAGAAC
TTAACTTTCACCAGCAGCAGCTCACCACCTAATGGTGACTCAATCAATAAAGACCCTAAATTATGCACTA
AAAGCCCAAGAAAACGACTGTCTTCTACATTGCAGGAGACCCAGGTGCCTCCTGTAAAGAAACCAATTGT
GGAACAGCTTTCAGCAGCTACCATAGAAGGGCAGAAACAAGGCAGTGTTAAGAAGGACCAAAAGGTTCCA
CATTCAGGGAAAACAGAAGGTTCAACAGCAGGTGCTCAGATTCCTAGCAAGGTATCAGTAAATGTCAGTT
CACACATAGGAGCAAATCAACCCTTGAATTCCTCTGCCCTTGTTATCAGTGATTCAGCTTTGGAACAGCA
AACAACCCCATCATCATCTCCAGATATAAAAGTAAAACTTGAAGGAAGTGTCTTTCTCTTGGACAGTGAT
TCAAAGTCAGTTGGCAGCTTTAATCCAAATGGATGGCAACAAATCACTAAAGATTCTGAGTTTATATCTG
CCAGTTGTGAACAACAGCAAGATATCAGTGTTATGACAATTCCTGAGCACTCTGATATCAATGACTTAGA
GAAATCTGTTTGGGAATTAGAAGGAATGCCACAGGACACATATAGCCAGCAGCTACATAGCCAGATACAG
GAATCTTCTTTAAATCAAATACAAGCACATTCTTCAGATCAGTTACCTCTGCAATCTGAACTGAAGGAGT
TTGAGCCTTCTGTTTCCCAGACAAATGAAAGCTACTTTCCTTTTGATGATGAACTTACACAAGATAGTAT
TGTGGAAGAGCTGGTGCTTATGGAGCAGCAAATGTCAATGAACAATTCTCATTCTTACGGCAACTGTTTG
GGAATGACCCTTCAGAGTCAGTCAGTAACTCCAGGAGCTCCAATGTCATCTCACACTTCCAGCACCCACT
TCTATCATCCAATCCACAGCAATGGCACTCCAATCCACACACCCACACCCACACCCACACCCACTCCTAC
TCCAACCCCAACCCCAACCCCGACATCTGAAATGATTGCTGGATCTCAGAGTCTGTCACGGGAGAGCCCT
TGCTCCAGGCTAGCCCAGACTACACCTGTGGATAGTGCTTTAGGAAGTAGCCGACATACACCCATTGGTA
CTCCACATTCTAACTGCAGCAGTAGTGTCCCCCCCAGCCCTGTTGAATGCAGGAATCCGTTTGCATTCAC
TCCAATAAGCTCCAGTATGGCATATCATGACGCCAGCATTGTCTCAAGTAGTCCTGTGAAACCGATGCAA
AGACCCATGGCCACACACCCTGACAAAACCAAGCTTGAATGGATGAATAATGGGTATAGTGGGGTTGGTA
ATTCATCAGTTTCTGGCCATGGTATTCTCCCAAGCTATCAGGAACTAGTGGAAGACCGTTTCAGGAAACC
TCATGCTTTTGCTGTGCCTGGACAGTCTTATCAGTCTCAATCCAGACATCATGACACTCATTTTGGTCGT
TTGACTCCTGTCTCTCCTGTGCAGCATCAAGGTGCCACTGTAAATAACACCAACAAACAGGAGGGTTTTG
CAGTCCCTGCCCCTCTTGATAATAAAGGAACTAATTCATCTGCCAGCAGCAACTTCAGATGCCGGAGTGT
GAGCCCTGCTGTTCATCGCCAACGTAATCTTAGTGGAAGCACCCTCTATCCAGTATCTAATATCCCACGA
TCTAATGTGACCCCCTTTGGAAGTCCAGTTACCCCAGAAGTTCATGTTTTCACAAATGTTCACACAGACG
CATGTGCCAACAACATAGCTCAAAGAAGCCAATCAGTTCCATTGACAGTCATGATGCAGACAGCCTTCCC
AAACGCTCTTCAGAAGCAAGCAAACAGTAAAAAAATAACCAATGTTTTGTTGAGTAAACTTGATTCCGAC
AATGATGATGCAGTGAGAGGTTTGGGAATGAACAACCTGCCCTCTAATTATACAGCCCGGATGAATCTCA
CTCAGATTTTGGAACCTTCCACTGTTTTTCCTAGTGCCAACCCACAAAATATGATCGATTCCAGCACTTC
TGTTTATGAGTTCCAAACACCATCTTACCTCACCAAAAGTAATAGCACCGGTCAGATCAATTTTTCTCCT
GGAGATAATCAAGCACAATCAGAAATTGGAGAGCAACAATTAGATTTCAATAGCACTGTTAAAGACCTGT
TGAGTGGAGACAGCTTGCAAACCAACCAGCAGCTGGTAGGTCAGGGAGCATCTGATCTCACTAATACTGC
ATCTGATTTCTCTAGCGATATCAGGTTGTCTTCTGAGCTCTCAGGCAGCATCAATGATTTGAACACTTTA
GACCCAAATCTACTGTTTGATCCAGGTCGTCAGCAGGGACAAGATGATGAAGCTACACTGGAAGAATTAA
AGAATGACCCATTATTTCAACAAATTTGCAGTGAATCCATGAATTCTATGACTTCATCAGGTTTTGAATG
GATAGAAAGCAAGGACCATCCTACTGTTGAAATGTTGGGTTAA

Translation (1460 aa):
MAEEQQQPPPQQPDAHQQLPPSAPNSGVALPALVPGLPGTEASALQHKIKNSICKTVQSKVDCILQEVEK
FTDLEKLYLYLQLPSGLSNGEKSDQNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCDNL
GYHPLSAADFGKIMKNVFPNMKARRLGTRGKSKYCYSGLRKKAFVHMPTLPNLDFHKTGDGLEGAEPSGQ
LQNIDEEVISSACRLVCEWAQKVLSQPFDTVLELARFLVKSHYIGTKSMAALTVMAAAPAGMKGITQPSA
FIPTAESNSFQPQVKTLPSPIDAKQQLQRKIQKKQQEQKLQSPLPGESAAKKSESATSNGVTNLPNGNPS
ILSPQPIGIVVAAVPSPIPVQRTRQLVTSPSPMSSSDGKVLPLNVQVVTQHMQSVKQAPKTPQNVPASPG
GDRSARHRYPQILPKPANTSALTIRSPTTVLFTSSPIKTAVVPASHMSSLNVVKMTTISLTPSNSNTPLK
HSASVSSATGTTEESRSVPQIKNGSVVSLQSPGSRSSSAGGTSAVEVKVEPETSSDEHPVQCQENSDEAK
APQTPSALLGQKSNTDGALQKPSNEGVIEIKATKVCDQRTKCKSRCNEMLPGTSTGNNQSTITLSVASQN
LTFTSSSSPPNGDSINKDPKLCTKSPRKRLSSTLQETQVPPVKKPIVEQLSAATIEGQKQGSVKKDQKVP
HSGKTEGSTAGAQIPSKVSVNVSSHIGANQPLNSSALVISDSALEQQTTPSSSPDIKVKLEGSVFLLDSD
SKSVGSFNPNGWQQITKDSEFISASCEQQQDISVMTIPEHSDINDLEKSVWELEGMPQDTYSQQLHSQIQ
ESSLNQIQAHSSDQLPLQSELKEFEPSVSQTNESYFPFDDELTQDSIVEELVLMEQQMSMNNSHSYGNCL
GMTLQSQSVTPGAPMSSHTSSTHFYHPIHSNGTPIHTPTPTPTPTPTPTPTPTPTSEMIAGSQSLSRESP
CSRLAQTTPVDSALGSSRHTPIGTPHSNCSSSVPPSPVECRNPFAFTPISSSMAYHDASIVSSSPVKPMQ
RPMATHPDKTKLEWMNNGYSGVGNSSVSGHGILPSYQELVEDRFRKPHAFAVPGQSYQSQSRHHDTHFGR
LTPVSPVQHQGATVNNTNKQEGFAVPAPLDNKGTNSSASSNFRCRSVSPAVHRQRNLSGSTLYPVSNIPR
SNVTPFGSPVTPEVHVFTNVHTDACANNIAQRSQSVPLTVMMQTAFPNALQKQANSKKITNVLLSKLDSD
NDDAVRGLGMNNLPSNYTARMNLTQILEPSTVFPSANPQNMIDSSTSVYEFQTPSYLTKSNSTGQINFSP
GDNQAQSEIGEQQLDFNSTVKDLLSGDSLQTNQQLVGQGASDLTNTASDFSSDIRLSSELSGSINDLNTL
DPNLLFDPGRQQGQDDEATLEELKNDPLFQQICSESMNSMTSSGFEWIESKDHPTVEMLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH