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Report for CCDS24965.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24965.1 Public Mus musculus 11 Kif1c 23 108 98 CCDS HistoryNCBI Gene:16562Re-query CCDS DB by CCDS ID:24965.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24965.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094499.10 ENSMUSP00000092075.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094499.10Link to Ensembl Protein Viewer:ENSMUSP00000092075.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000094499Re-query CCDS DB by Protein ID:ENSMUSP00000092075
Original member Current member EBI ENSMUST00000102554.7 ENSMUSP00000099614.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102554.7Link to Ensembl Protein Viewer:ENSMUSP00000099614.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102554Re-query CCDS DB by Protein ID:ENSMUSP00000099614
Original member Current member EBI ENSMUST00000137119.2 ENSMUSP00000123242.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000137119.2Link to Ensembl Protein Viewer:ENSMUSP00000123242.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000137119Re-query CCDS DB by Protein ID:ENSMUSP00000123242
Original member Current member NCBI NM_153103.2 NP_694743.2 Accepted alive Link to Nucleotide Sequence:NM_153103.2Link to Protein Sequence:NP_694743.2Re-query CCDS DB by Nucleotide ID:NM_153103Re-query CCDS DB by Protein ID:NP_694743Link to BLAST:NP_694743.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694743.2 1100 O35071 1100 100% 0 0

Chromosomal Locations for CCDS 24965.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 70702800 70702905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70703268 70703344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70703699 70703878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70704458 70704523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70704899 70705077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70705170 70705281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70705681 70705758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70705900 70705965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70706053 70706128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70706681 70706759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70706941 70707086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70708442 70708611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70708779 70708858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70708951 70709026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70717419 70717498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70718999 70719093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70724048 70724131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70724822 70725008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70725104 70725176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70725888 70726502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70728202 70728879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3303 nt):
ATGGCTGGAGCCTCCGTGAAAGTTGCAGTGAGGGTTCGGCCCTTTAATGCCCGTGAGACCAGCCAGGATG
CCAAGTGTGTGGTCAGCATGCAGGGCAACACCACCTCCATCATTAATCCCAAACAGAGCAAGGATGCCCC
CAAAAGCTTCACCTTCGACTATTCTTACTGGTCGCATACTTCGGTGGAGGATCCGCAGTTTGCATCTCAG
CAGCAGGTGTACCGAGACATAGGAGAAGAGATGCTACTCCATGCCTTTGAAGGCTACAATGTGTGCATCT
TTGCCTACGGGCAGACGGGGGCTGGGAAGTCCTACACCATGATGGGGCGGCAGGAGCCGGGGCAGCAGGG
CATTGTGCCTCAGCTCTGTGAGGACCTCTTCTCTCGAGTCAATGTGAACCAGAGTGCCCAGCTTTCCTAT
TCAGTAGAGGTGAGCTATATGGAAATCTATTGCGAGCGAGTACGAGACCTCTTGAACCCCAAGAGTCGGG
GCTCTCTGCGGGTCCGGGAGCACCCCATCCTAGGCCCGTACGTGCAAGACCTGTCTAAACTGGCTGTGAC
TTCCTATGCAGACATTGCCGACCTCATGGACTGTGGAAATAAGGCAAGAACCGTGGCTGCCACCAACATG
AACGAGACCAGCAGCCGCTCCCATGCCGTCTTTACTATTGTCTTTACCCAGCGATCCCATGACCAGCTTA
CTGGCCTGGATTCAGAAAAGGTCAGTAAGATCAGCTTGGTGGACCTCGCCGGGAGTGAGCGGGCTGACTC
CTCAGGGGCCCGGGGGATGCGTCTAAAGGAAGGCGCCAACATCAATAAGTCCCTGACTACGCTTGGGAAG
GTGATCTCAGCCCTGGCAGATTTGCAATCAAAGAAGCGGAAGTCGGATTTCATCCCCTATAGAGACTCAG
TGCTTACCTGGCTGCTCAAGGAGAATTTGGGTGGGAACTCTCGCACAGCAATGATTGCAGCCCTGAGTCC
TGCTGACATCAATTACGAGGAGACACTCAGCACTCTCAGGTATGCAGACCGCACCAAGCAGATCCGATGC
AATGCTGTCATCAACGAGGACCCCAATGCCCGGCTTATCCGGGAGCTGCAGGAGGAGGTGGCCCGGCTGC
GGGACCTGCTGATGGCTCAGGGGCTGTCAGCCTCTGCTCTAGGAGGTCTAAAGGTGGAAGAGGGGAGTCC
TGGAGGTGTTCTGCCCCCTGCATCATCTCCCCCCGCCCCAGCTTCACCCTCATCTCCTCCCCCACATAAT
GGGGAGCTGGAGCCCTCATTCTCACCCAGTGCCGAGCCCCAGATTGGGCCTGAGGAGGCCATGGAGAGGC
TGCAGGAAACAGAGAAGATCATAGCTGAGCTGAATGAGACTTGGGAGGAGAAGCTTCGGAAGACAGAGGC
TCTGAGAATGGAGAGAGAAGCATTGCTGGCTGAGATGGGCGTGGCTGTCCGGGAGGATGGCGGTACTGTG
GGTGTCTTCTCTCCAAAAAAGACTCCCCACCTGGTAAATCTGAATGAGGACCCCTTGATGTCTGAATGTC
TTCTCTACCACATCAAAGATGGCGTCACCAGGGTTGGCCAAGTAGATGTGGACATCAAGTTGACTGGCCA
GTTCATCCGGGAGCAGCATTGCCTCTTCCGCAGCATCCCTCAGCCTGATGGAGAAGTGATGGTTACTCTG
GAGCCTTGTGAAGGAGCTGAGACATATGTCAATGGGAAGCTCGTGACGGAGCCGCTGGTGCTGAAGTCAG
GAAACAGGATTGTAATGGGCAAGAACCATGTTTTCCGCTTCAATCACCCGGAGCAGGCGCGGCTGGAACG
AGAACGTGGGGTCCCCCCGCCCCCAGGACCTCCCTCGGAGCCTGTGGACTGGAACTTTGCTCAGAAGGAG
CTGCTGGAGCAGCAAGGCATAGACATCAAGCTGGAGATGGAGAAGAGGCTGCAGGACTTGGAGAATCAGT
ACCGGAAAGAGAAGGAAGAGGCTGACCTTCTGCTGGAGCAGCAGCGGCTGTATGCAGACTCTGACAGCGG
GGAAGACTCTGACAAGCGTTCTTGTGAAGAAAGCTGGCGGCTGATTTCCTCCTTGCGGGAGCAGCTGCCC
CCTACCACAGTACAGAACATTGTCAAGCGCTGTGGCCTGCCTAGTAGTGGCAAGCGCAGGGCCCCTCGAA
GAGTCTATCAGATCCCTCAGCGACGGCGGCTCCAGGGCAAAGACCCCCGATGGGCCACCATGGCTGACCT
GAAGATGCAGGCAGTAAAGGAGATATGCTATGAGGTGGCCCTAGCCGACTTCCGCCACGGACGAGCAGAA
ATTGAAGCCCTGGCTGCTCTCAAGATGAGGGAGCTGTGCCGAACCTACGGCAAGCCAGAGGGTCCTGGAG
ATGCCTGGAGAGCCGTGGCCAGGGATGTCTGGGATACTGTGGGTGAAGAAGAAGGATGTGGAGGTGGCGG
AGGTGGCAGTGAGGAGGGAGCCCGTGGGGCAGAGGTGGAGGACCTCCGGGCTCACATCGACAAGCTGACA
GGGATCCTGCAGGAGGTGAAGCTCCAGAACAGCAGCAAGGACCGCGAGCTGCAGGCCCTGCGGGACCGCA
TGCTCCGCATGGAGAGGGTCATCCCGCTGACTCAGGATCTTGAGGATGATAATGACGAGTCTGGTTTGGT
CACCTGGGCCCCACCGGAAGGGCCAGAAGCAGTAGAGGAGACAGTGCCCAACGACCACTCACCAGCTGTC
CGGCCCACCTCACCACCTCTGTCCAGCTGGGAGCGGGTGTCGAGATTGATGGAAGAGGACCCTGCCTTCC
GTCGCGGCCGCCTTCGCTGGCTCAAGCAGGAGCAGCTGCGGCTGCAGGGACTGCAGGGCGCTGGGGGCCG
GGGTGGGGGACTGCGCAGGCCTCCAGCCCGCTTTGTGCCCCCGCATGATTGCAAGCTGCGCTTCCCCTTC
AAAAGCAACCCTCAGCACAGGGAGTCCTGGCCAGGAATGGGGAGTGGAGAGGCCCCAGCTCCTCAGCCCC
CTGAAGAGGTCACTGTCCCCCCAGCACCCCCTAACCGTAGGCCTCCAAGTCCCCGAAGACCCCACCGTTC
TCGCAGGAATTCCCTAGATGGAGGGAGCCGATCTCGGGGAGGGGGTTCTACACAGCCAGAACCCCAGCAC
TTACGGCCCCAAAAGCACAACGGTTATCCCCAACAGCCCCAGCCCAGCCCAGCCCAGCGGCCAGGGCCCC
GCTACCCACCATACACTACCCCTCCGCGAATGCGACGGCAGCGCTCAGCCCCTGACCTCAAAGAGAGTGG
GGCAGCTGTGTGA

Translation (1100 aa):
MAGASVKVAVRVRPFNARETSQDAKCVVSMQGNTTSIINPKQSKDAPKSFTFDYSYWSHTSVEDPQFASQ
QQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGKSYTMMGRQEPGQQGIVPQLCEDLFSRVNVNQSAQLSY
SVEVSYMEIYCERVRDLLNPKSRGSLRVREHPILGPYVQDLSKLAVTSYADIADLMDCGNKARTVAATNM
NETSSRSHAVFTIVFTQRSHDQLTGLDSEKVSKISLVDLAGSERADSSGARGMRLKEGANINKSLTTLGK
VISALADLQSKKRKSDFIPYRDSVLTWLLKENLGGNSRTAMIAALSPADINYEETLSTLRYADRTKQIRC
NAVINEDPNARLIRELQEEVARLRDLLMAQGLSASALGGLKVEEGSPGGVLPPASSPPAPASPSSPPPHN
GELEPSFSPSAEPQIGPEEAMERLQETEKIIAELNETWEEKLRKTEALRMEREALLAEMGVAVREDGGTV
GVFSPKKTPHLVNLNEDPLMSECLLYHIKDGVTRVGQVDVDIKLTGQFIREQHCLFRSIPQPDGEVMVTL
EPCEGAETYVNGKLVTEPLVLKSGNRIVMGKNHVFRFNHPEQARLERERGVPPPPGPPSEPVDWNFAQKE
LLEQQGIDIKLEMEKRLQDLENQYRKEKEEADLLLEQQRLYADSDSGEDSDKRSCEESWRLISSLREQLP
PTTVQNIVKRCGLPSSGKRRAPRRVYQIPQRRRLQGKDPRWATMADLKMQAVKEICYEVALADFRHGRAE
IEALAALKMRELCRTYGKPEGPGDAWRAVARDVWDTVGEEEGCGGGGGGSEEGARGAEVEDLRAHIDKLT
GILQEVKLQNSSKDRELQALRDRMLRMERVIPLTQDLEDDNDESGLVTWAPPEGPEAVEETVPNDHSPAV
RPTSPPLSSWERVSRLMEEDPAFRRGRLRWLKQEQLRLQGLQGAGGRGGGLRRPPARFVPPHDCKLRFPF
KSNPQHRESWPGMGSGEAPAPQPPEEVTVPPAPPNRRPPSPRRPHRSRRNSLDGGSRSRGGGSTQPEPQH
LRPQKHNGYPQQPQPSPAQRPGPRYPPYTTPPRMRRQRSAPDLKESGAAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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