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Report for CCDS47953.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47953.1 Public Homo sapiens 9 CNTLN 24 110 108 CCDS HistoryNCBI Gene:54875Re-query CCDS DB by CCDS ID:47953.1Re-query CCDS DB by GeneID:54875See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47953.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380641.4 ENSP00000370015.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380641.4Link to Ensembl Protein Viewer:ENSP00000370015.3Re-query CCDS DB by Nucleotide ID:ENST00000380641Re-query CCDS DB by Protein ID:ENSP00000370015
Original member Current member NCBI NM_001114395.3 NP_001107867.1 Accepted alive Link to Nucleotide Sequence:NM_001114395.3Link to Protein Sequence:NP_001107867.1Re-query CCDS DB by Nucleotide ID:NM_001114395Re-query CCDS DB by Protein ID:NP_001107867Link to BLAST:NP_001107867.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107867.1 391 Q9NXG0-3 391 100% 0 0

Chromosomal Locations for CCDS 47953.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 17135066 17135425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17143288 17143376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17226203 17226287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17235658 17235792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17236409 17236588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17273733 17273866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17298190 17298382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1176 nt):
ATGGCGGCGCGTTCGCCTCCCTCACCGCACCCTTCGCCCCCAGCGCGACAGCTGGGCCCCAGGTCCCCAC
GTGTTGGGCGGGGAGCTGAAGTACACGCAATGCGCAGCGAGGCCTCGGGTTTTGCCGGCGCAGCGCGGGA
GGTGGTCGCGGACGAAAGTGATAAAATCTGGGTGGGTGAAGAAGGGTCAGGGGGCCGGCGAGGGCCTGGG
GGGGCAGCTCCGGCTCATGCTCCCCTCCTCAGCGCGCCCATGGGGTCCAGACGGCTAGAGGGCATCTCGG
TAGAGGAGGCGATGGTGACCCGGACGCAGCTGCTGGAGGAAGAGCTGAGCAGCCTAAAGGAGGAGTTGGC
CCTGTGTCAGGCTGATAAAGAATTTGTATGGTCTTTGTGGAAACGTCTCCAGGTTACAAACCCAGATCTC
ACACAAGTGGTCAGTTTGGTTGTGGAAAGAGAAAAACAGAAATCTGAAGCTAAAGACAGAAAAGTTCTAG
AAATTCTGCAAGTCAAGGATGCCAAAATACAAGAATTTGAACAGAGAGAGTCAGTACTGAAACAGGAAAT
AAATGACCTTGTAAAACGGAAAATTGCAGTAGATGAAGAAAATGCTTTCTTAAGGAAAGAATTCAGTGAC
TTGGAGAAGAAATTTAAAGATAAAAGTCAAGAAATTAAGGACACTAAGGAGTGTGTACAGAACAAAGAAG
AGCAAAACAGACTAGTTATAAAAAATCTGGAGGAGGAAAACAAGAAATTAAGTACCCGCTGCACTGACCT
GCTAAATGACCTGGAGAAATTGAGGAAGCAGGAAGCACATTTGAGAAAAGAAAAATATAGCACTGATGCA
AAAATAAAGACCTTTGAAGACAATTTAATTGAAGCAAGGAAAGAAGTTGAAGTATCACAGAGTAAATACA
ATGCTCTATCATTACAGTTGAGTAATAAACAGACTGAACTTATCCAGAAGGATATGGATATTACCCTGGT
CAGGAAGGAACTGCAGGAGCTGCAGAATCTTTACAAACAGAACAGTACACATACAGCCCAGCAAGCAGAG
CTGATCCAGCAGCTTCAGGTTCTCAATATGGACACACAAAAAGTACTGAGAAATCAGGAAGATGTTCACA
CAGCTGAAAGTATATCATATCAAAAAGTATGCTTTTATTCTGTAATAAAGATGTAA

Translation (391 aa):
MAARSPPSPHPSPPARQLGPRSPRVGRGAEVHAMRSEASGFAGAAREVVADESDKIWVGEEGSGGRRGPG
GAAPAHAPLLSAPMGSRRLEGISVEEAMVTRTQLLEEELSSLKEELALCQADKEFVWSLWKRLQVTNPDL
TQVVSLVVEREKQKSEAKDRKVLEILQVKDAKIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSD
LEKKFKDKSQEIKDTKECVQNKEEQNRLVIKNLEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDA
KIKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQELQNLYKQNSTHTAQQAE
LIQQLQVLNMDTQKVLRNQEDVHTAESISYQKVCFYSVIKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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