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Report for CCDS11168.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11168.1 Public Homo sapiens 17 PMP22 24 110 108 CCDS HistoryNCBI Gene:5376Re-query CCDS DB by CCDS ID:11168.1Re-query CCDS DB by GeneID:5376See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11168.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000312280.9 ENSP00000308937.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000312280.9Link to Ensembl Protein Viewer:ENSP00000308937.3Re-query CCDS DB by Nucleotide ID:ENST00000312280Re-query CCDS DB by Protein ID:ENSP00000308937
Original member Current member EBI ENST00000612492.5 ENSP00000484631.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000612492.5Link to Ensembl Protein Viewer:ENSP00000484631.1Re-query CCDS DB by Nucleotide ID:ENST00000612492Re-query CCDS DB by Protein ID:ENSP00000484631
Original member Current member EBI ENST00000675950.1 ENSP00000501546.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675950.1Link to Ensembl Protein Viewer:ENSP00000501546.1Re-query CCDS DB by Nucleotide ID:ENST00000675950Re-query CCDS DB by Protein ID:ENSP00000501546
Original member Current member EBI ENST00000675350.1 ENSP00000501557.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675350.1Link to Ensembl Protein Viewer:ENSP00000501557.1Re-query CCDS DB by Nucleotide ID:ENST00000675350Re-query CCDS DB by Protein ID:ENSP00000501557
Original member Current member EBI ENST00000674651.1 ENSP00000501727.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674651.1Link to Ensembl Protein Viewer:ENSP00000501727.1Re-query CCDS DB by Nucleotide ID:ENST00000674651Re-query CCDS DB by Protein ID:ENSP00000501727
Original member Current member EBI ENST00000674673.1 ENSP00000501804.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674673.1Link to Ensembl Protein Viewer:ENSP00000501804.1Re-query CCDS DB by Nucleotide ID:ENST00000674673Re-query CCDS DB by Protein ID:ENSP00000501804
Original member Current member EBI ENST00000675819.1 ENSP00000502018.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675819.1Link to Ensembl Protein Viewer:ENSP00000502018.1Re-query CCDS DB by Nucleotide ID:ENST00000675819Re-query CCDS DB by Protein ID:ENSP00000502018
Original member Current member EBI ENST00000675808.1 ENSP00000502310.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675808.1Link to Ensembl Protein Viewer:ENSP00000502310.1Re-query CCDS DB by Nucleotide ID:ENST00000675808Re-query CCDS DB by Protein ID:ENSP00000502310
Original member Current member EBI ENST00000676221.1 ENSP00000502601.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676221.1Link to Ensembl Protein Viewer:ENSP00000502601.1Re-query CCDS DB by Nucleotide ID:ENST00000676221Re-query CCDS DB by Protein ID:ENSP00000502601
Original member Current member EBI ENST00000674868.1 ENSP00000502835.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674868.1Link to Ensembl Protein Viewer:ENSP00000502835.1Re-query CCDS DB by Nucleotide ID:ENST00000674868Re-query CCDS DB by Protein ID:ENSP00000502835
Original member Current member NCBI NM_000304.4 NP_000295.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000304.4Link to Protein Sequence:NP_000295.1Re-query CCDS DB by Nucleotide ID:NM_000304Re-query CCDS DB by Protein ID:NP_000295Link to BLAST:NP_000295.1
Original member Current member NCBI NM_001281455.2 NP_001268384.1 Accepted alive Link to Nucleotide Sequence:NM_001281455.2Link to Protein Sequence:NP_001268384.1Re-query CCDS DB by Nucleotide ID:NM_001281455Re-query CCDS DB by Protein ID:NP_001268384Link to BLAST:NP_001268384.1
Original member Current member NCBI NM_001281456.2 NP_001268385.1 Accepted alive Link to Nucleotide Sequence:NM_001281456.2Link to Protein Sequence:NP_001268385.1Re-query CCDS DB by Nucleotide ID:NM_001281456Re-query CCDS DB by Protein ID:NP_001268385Link to BLAST:NP_001268385.1
Original member Current member NCBI NM_153321.3 NP_696996.1 Accepted alive Link to Nucleotide Sequence:NM_153321.3Link to Protein Sequence:NP_696996.1Re-query CCDS DB by Nucleotide ID:NM_153321Re-query CCDS DB by Protein ID:NP_696996Link to BLAST:NP_696996.1
Original member Current member NCBI NM_153322.3 NP_696997.1 Accepted alive Link to Nucleotide Sequence:NM_153322.3Link to Protein Sequence:NP_696997.1Re-query CCDS DB by Nucleotide ID:NM_153322Re-query CCDS DB by Protein ID:NP_696997Link to BLAST:NP_696997.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000295.1 160 Q01453 160 100% 0 0
NP_001268384.1 160 Q01453 160 100% 0 0
NP_001268385.1 160 Q01453 160 100% 0 0
NP_696996.1 160 Q01453 160 100% 0 0
NP_696997.1 160 Q01453 160 100% 0 0

Chromosomal Locations for CCDS 11168.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 15230917 15231080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15239471 15239611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15259094 15259193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15260650 15260727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (483 nt):
ATGCTCCTCCTGTTGCTGAGTATCATCGTCCTCCACGTCGCGGTGCTGGTGCTGCTGTTCGTCTCCACGA
TCGTCAGCCAATGGATCGTGGGCAATGGACACGCAACTGATCTCTGGCAGAACTGTAGCACCTCTTCCTC
AGGAAATGTCCACCACTGTTTCTCATCATCACCAAACGAATGGCTGCAGTCTGTCCAGGCCACCATGATC
CTGTCGATCATCTTCAGCATTCTGTCTCTGTTCCTGTTCTTCTGCCAACTCTTCACCCTCACCAAGGGGG
GCAGGTTTTACATCACTGGAATCTTCCAAATTCTTGCTGGTCTGTGCGTGATGAGTGCTGCGGCCATCTA
CACGGTGAGGCACCCGGAGTGGCATCTCAACTCGGATTACTCCTACGGTTTCGCCTACATCCTGGCCTGG
GTGGCCTTCCCCCTGGCCCTTCTCAGCGGTGTCATCTATGTGATCTTGCGGAAACGCGAATGA

Translation (160 aa):
MLLLLLSIIVLHVAVLVLLFVSTIVSQWIVGNGHATDLWQNCSTSSSGNVHHCFSSSPNEWLQSVQATMI
LSIIFSILSLFLFFCQLFTLTKGGRFYITGIFQILAGLCVMSAAAIYTVRHPEWHLNSDYSYGFAYILAW
VAFPLALLSGVIYVILRKRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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