NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS11498.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11498.1 Public Homo sapiens 17 ARHGAP27 24 110 108 CCDS HistoryNCBI Gene:201176Re-query CCDS DB by CCDS ID:11498.1Re-query CCDS DB by GeneID:201176See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11498.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376922.6 ENSP00000366121.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000376922.6Link to Ensembl Protein Viewer:ENSP00000366121.2Re-query CCDS DB by Nucleotide ID:ENST00000376922Re-query CCDS DB by Protein ID:ENSP00000366121
Original member Current member NCBI NM_199282.3 NP_954976.1 Accepted alive Link to Nucleotide Sequence:NM_199282.3Link to Protein Sequence:NP_954976.1Re-query CCDS DB by Nucleotide ID:NM_199282Re-query CCDS DB by Protein ID:NP_954976Link to BLAST:NP_954976.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_954976.1 548 Q6ZUM4-2 548 100% 0 0

Chromosomal Locations for CCDS 11498.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 45395456 45395633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45395744 45395849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45395983 45396117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45396207 45396284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45396487 45396585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45396668 45396790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45396916 45397024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45397949 45398047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45402714 45402818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45403619 45403709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45404029 45404096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45404269 45404334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45404445 45404528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45404601 45404681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45404924 45405106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45405676 45405717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1647 nt):
ATGCAGCCGGGCCTGAGCCCTGGCAGCCCAGGGGACCCGCGGCCCCCCACTCCCGAGACGGACTACCCCG
AGTCGCTGACCAGTTACCCCGAGGAGGACTATTCTCCCGTGGGCTCTTTCGGTGAGCCCGGCCCTACCTC
TCCCTTGACCACACCCCCCGGCTGGTCTTGTCATGTCAGCCAGGACAAGCAGATGCTCTACACCAACCAC
TTCACTCAGGAGCAGTGGGTGAGGCTGGAGGACCCCCACGGGAAGCCATACTTCTACAATCCAGAGGACT
CCTCTGTTCGATGGGAGCTGCCCCAGGTCCCTGTCCCTGCCCCTCGAAGCATCCATAAATCCAGCCAGGA
TGGTGACACCCCAGCCCAGGCCAGCCCTCCAGAGGAGAAGGTCCCAGCAGAGCTGGATGAGGTTGGGAGC
TGGGAGGAAGTCTCTCCTGCCACAGCTGCTGTGAGGACCAAGACCTTGGACAAGGCAGGGGTGCTCCATC
GCACCAAGACGGCAGACAAGGGAAAGCGGCTCCGGAAGAAGCACTGGAGTGCCTCCTGGACTGTGCTGGA
GGGTGGCGTCCTGACATTCTTCAAGGACTCAAAGACCTCGGCTGCAGGCGGCCTGAGGCAGCCTTCCAAG
TTTTCCACCCCTGAGTACACAGTGGAGCTGAGGGGGGCCACTCTCTCCTGGGCCCCCAAAGACAAATCCA
GTAGGAAGAATGTGCTGGAGCTACGGAGCCGAGATGGCTCTGAGTACCTGATCCAGCACGACTCGGAGGC
CATCATCAGCACCTGGCATAAGGCCATTGCTCAGGGCATCCAGGAGCTGTCCGCAGAGCTGCCCCCAGAG
GAGAGCGAGAGCAGCAGAGTGGACTTCGGGTCGAGCGAGCGCTTGGGAAGCTGGCAGGAGAAAGAGGAGG
ACGCGCGACCGAATGCAGCCGCGCCCGCCCTGGGCCCCGTGGGCCTGGAGAGCGACTTGAGCAAGGTCCG
GCACAAGCTCCGCAAGTTCCTCCAGAGGCGGCCCACACTGCAGTCGCTGCGGGAGAAGGGCTACATCAAA
GACCAGGTGTTCGGCTGCGCGCTGGCCGCGCTGTGTGAGCGCGAGAGGAGCCGGGTGCCACGCTTCGTGC
AGCAGTGCATCCGCGCCGTCGAGGCCCGCGGGCTGGACATCGACGGGCTGTACCGCATCAGTGGAAACCT
GGCCACCATCCAGAAGCTACGCTATAAGGTGGACCACGATGAGCGCCTTGACCTGGATGACGGGCGCTGG
GAGGACGTCCACGTTATCACCGGAGCCCTGAAGCTCTTCTTTCGGGAGCTGCCCGAGCCCCTCTTCCCCT
TCTCGCACTTCCGCCAGTTCATTGCGGCCATCAAGTTGCAGGACCAGGCCCGGCGCAGCCGCTGTGTGCG
TGACTTGGTGCGCTCGCTGCCCGCTCCCAACCACGACACTCTGCGGATGCTCTTCCAGCACCTCTGCCGG
GTGATCGAGCACGGCGAGCAGAACCGCATGTCGGTGCAGAGCGTGGCCATTGTGTTCGGGCCCACGCTGC
TGCGGCCCGAGGTGGAAGAGACCAGCATGCCCATGACCATGGTGTTCCAGAACCAGGTGGTGGAGCTCAT
CCTGCAGCAGTGCGCGGACATCTTCCCGCCGCACTGA

Translation (548 aa):
MQPGLSPGSPGDPRPPTPETDYPESLTSYPEEDYSPVGSFGEPGPTSPLTTPPGWSCHVSQDKQMLYTNH
FTQEQWVRLEDPHGKPYFYNPEDSSVRWELPQVPVPAPRSIHKSSQDGDTPAQASPPEEKVPAELDEVGS
WEEVSPATAAVRTKTLDKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSK
FSTPEYTVELRGATLSWAPKDKSSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQGIQELSAELPPE
ESESSRVDFGSSERLGSWQEKEEDARPNAAAPALGPVGLESDLSKVRHKLRKFLQRRPTLQSLREKGYIK
DQVFGCALAALCERERSRVPRFVQQCIRAVEARGLDIDGLYRISGNLATIQKLRYKVDHDERLDLDDGRW
EDVHVITGALKLFFRELPEPLFPFSHFRQFIAAIKLQDQARRSRCVRDLVRSLPAPNHDTLRMLFQHLCR
VIEHGEQNRMSVQSVAIVFGPTLLRPEVEETSMPMTMVFQNQVVELILQQCADIFPPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH