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Report for CCDS9508.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9508.1 Public Homo sapiens 13 LIG4 24 110 108 CCDS HistoryNCBI Gene:3981Re-query CCDS DB by CCDS ID:9508.1Re-query CCDS DB by GeneID:3981See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9508.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000405925.2 ENSP00000385955.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405925.2Link to Ensembl Protein Viewer:ENSP00000385955.1Re-query CCDS DB by Nucleotide ID:ENST00000405925Re-query CCDS DB by Protein ID:ENSP00000385955
Original member Current member EBI ENST00000442234.6 ENSP00000402030.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000442234.6Link to Ensembl Protein Viewer:ENSP00000402030.1Re-query CCDS DB by Nucleotide ID:ENST00000442234Re-query CCDS DB by Protein ID:ENSP00000402030
Original member Current member EBI ENST00000611712.4 ENSP00000484288.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611712.4Link to Ensembl Protein Viewer:ENSP00000484288.1Re-query CCDS DB by Nucleotide ID:ENST00000611712Re-query CCDS DB by Protein ID:ENSP00000484288
Original member Current member EBI ENST00000687164.1 ENSP00000508512.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000687164.1Link to Ensembl Protein Viewer:ENSP00000508512.1Re-query CCDS DB by Nucleotide ID:ENST00000687164Re-query CCDS DB by Protein ID:ENSP00000508512
Original member Current member EBI ENST00000686926.1 ENSP00000509122.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000686926.1Link to Ensembl Protein Viewer:ENSP00000509122.1Re-query CCDS DB by Nucleotide ID:ENST00000686926Re-query CCDS DB by Protein ID:ENSP00000509122
Original member Current member EBI ENST00000692222.1 ENSP00000509226.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000692222.1Link to Ensembl Protein Viewer:ENSP00000509226.1Re-query CCDS DB by Nucleotide ID:ENST00000692222Re-query CCDS DB by Protein ID:ENSP00000509226
Original member Current member EBI ENST00000686913.1 ENSP00000509299.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000686913.1Link to Ensembl Protein Viewer:ENSP00000509299.1Re-query CCDS DB by Nucleotide ID:ENST00000686913Re-query CCDS DB by Protein ID:ENSP00000509299
Original member Current member EBI ENST00000688455.1 ENSP00000509304.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000688455.1Link to Ensembl Protein Viewer:ENSP00000509304.1Re-query CCDS DB by Nucleotide ID:ENST00000688455Re-query CCDS DB by Protein ID:ENSP00000509304
Original member Current member EBI ENST00000687822.1 ENSP00000509344.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000687822.1Link to Ensembl Protein Viewer:ENSP00000509344.1Re-query CCDS DB by Nucleotide ID:ENST00000687822Re-query CCDS DB by Protein ID:ENSP00000509344
Original member Current member EBI ENST00000688595.1 ENSP00000509502.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000688595.1Link to Ensembl Protein Viewer:ENSP00000509502.1Re-query CCDS DB by Nucleotide ID:ENST00000688595Re-query CCDS DB by Protein ID:ENSP00000509502
Original member Current member EBI ENST00000688396.1 ENSP00000509564.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000688396.1Link to Ensembl Protein Viewer:ENSP00000509564.1Re-query CCDS DB by Nucleotide ID:ENST00000688396Re-query CCDS DB by Protein ID:ENSP00000509564
Original member Current member EBI ENST00000686204.1 ENSP00000509685.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000686204.1Link to Ensembl Protein Viewer:ENSP00000509685.1Re-query CCDS DB by Nucleotide ID:ENST00000686204Re-query CCDS DB by Protein ID:ENSP00000509685
Original member Current member EBI ENST00000688529.1 ENSP00000509906.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000688529.1Link to Ensembl Protein Viewer:ENSP00000509906.1Re-query CCDS DB by Nucleotide ID:ENST00000688529Re-query CCDS DB by Protein ID:ENSP00000509906
Original member Current member EBI ENST00000686095.1 ENSP00000509942.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000686095.1Link to Ensembl Protein Viewer:ENSP00000509942.1Re-query CCDS DB by Nucleotide ID:ENST00000686095Re-query CCDS DB by Protein ID:ENSP00000509942
Original member Current member EBI ENST00000693040.1 ENSP00000510014.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000693040.1Link to Ensembl Protein Viewer:ENSP00000510014.1Re-query CCDS DB by Nucleotide ID:ENST00000693040Re-query CCDS DB by Protein ID:ENSP00000510014
Original member Current member EBI ENST00000685338.1 ENSP00000510567.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000685338.1Link to Ensembl Protein Viewer:ENSP00000510567.1Re-query CCDS DB by Nucleotide ID:ENST00000685338Re-query CCDS DB by Protein ID:ENSP00000510567
Original member Current member NCBI NM_001098268.2 NP_001091738.1 Accepted alive Link to Nucleotide Sequence:NM_001098268.2Link to Protein Sequence:NP_001091738.1Re-query CCDS DB by Nucleotide ID:NM_001098268Re-query CCDS DB by Protein ID:NP_001091738Link to BLAST:NP_001091738.1
Original member Current member NCBI NM_001352598.2 NP_001339527.1 Accepted alive Link to Nucleotide Sequence:NM_001352598.2Link to Protein Sequence:NP_001339527.1Re-query CCDS DB by Nucleotide ID:NM_001352598Re-query CCDS DB by Protein ID:NP_001339527Link to BLAST:NP_001339527.1
Original member Current member NCBI NM_001352599.2 NP_001339528.1 Accepted alive Link to Nucleotide Sequence:NM_001352599.2Link to Protein Sequence:NP_001339528.1Re-query CCDS DB by Nucleotide ID:NM_001352599Re-query CCDS DB by Protein ID:NP_001339528Link to BLAST:NP_001339528.1
Original member Current member NCBI NM_001352600.2 NP_001339529.1 Accepted alive Link to Nucleotide Sequence:NM_001352600.2Link to Protein Sequence:NP_001339529.1Re-query CCDS DB by Nucleotide ID:NM_001352600Re-query CCDS DB by Protein ID:NP_001339529Link to BLAST:NP_001339529.1
Original member Current member NCBI NM_001352601.2 NP_001339530.1 Accepted alive Link to Nucleotide Sequence:NM_001352601.2Link to Protein Sequence:NP_001339530.1Re-query CCDS DB by Nucleotide ID:NM_001352601Re-query CCDS DB by Protein ID:NP_001339530Link to BLAST:NP_001339530.1
Original member Current member NCBI NM_001352602.2 NP_001339531.1 Accepted alive Link to Nucleotide Sequence:NM_001352602.2Link to Protein Sequence:NP_001339531.1Re-query CCDS DB by Nucleotide ID:NM_001352602Re-query CCDS DB by Protein ID:NP_001339531Link to BLAST:NP_001339531.1
Original member Current member NCBI NM_001352603.1 NP_001339532.1 Accepted alive Link to Nucleotide Sequence:NM_001352603.1Link to Protein Sequence:NP_001339532.1Re-query CCDS DB by Nucleotide ID:NM_001352603Re-query CCDS DB by Protein ID:NP_001339532Link to BLAST:NP_001339532.1
Original member Current member NCBI NM_001379095.1 NP_001366024.1 Accepted alive Link to Nucleotide Sequence:NM_001379095.1Link to Protein Sequence:NP_001366024.1Re-query CCDS DB by Nucleotide ID:NM_001379095Re-query CCDS DB by Protein ID:NP_001366024Link to BLAST:NP_001366024.1
Original member Current member NCBI NM_002312.3 NP_002303.2 Accepted alive Link to Nucleotide Sequence:NM_002312.3Link to Protein Sequence:NP_002303.2Re-query CCDS DB by Nucleotide ID:NM_002312Re-query CCDS DB by Protein ID:NP_002303Link to BLAST:NP_002303.2
Original member Current member NCBI NM_206937.2 NP_996820.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_206937.2Link to Protein Sequence:NP_996820.1Re-query CCDS DB by Nucleotide ID:NM_206937Re-query CCDS DB by Protein ID:NP_996820Link to BLAST:NP_996820.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001091738.1 911 P49917 911 100% 0 0
NP_001339527.1 911 P49917 911 100% 0 0
NP_001339528.1 911 P49917 911 100% 0 0
NP_001339529.1 911 P49917 911 100% 0 0
NP_001339530.1 911 P49917 911 100% 0 0
NP_001339531.1 911 P49917 911 100% 0 0
NP_001339532.1 911 P49917 911 100% 0 0
NP_001366024.1 911 P49917 911 100% 0 0
NP_002303.2 911 P49917 911 100% 0 0
NP_996820.1 911 P49917 911 100% 0 0

Chromosomal Locations for CCDS 9508.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 108208533 108211268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2736 nt):
ATGGCTGCCTCACAAACTTCACAAACTGTTGCATCTCACGTTCCTTTTGCAGATTTGTGTTCAACTTTAG
AACGAATACAGAAAAGTAAAGGACGTGCAGAAAAAATCAGACACTTCAGGGAATTTTTAGATTCTTGGAG
AAAATTTCATGATGCTCTTCATAAGAACCACAAAGATGTCACAGACTCTTTTTATCCAGCAATGAGACTA
ATTCTTCCTCAGCTAGAAAGAGAGAGAATGGCCTATGGAATTAAAGAAACTATGCTTGCTAAGCTTTATA
TTGAGTTGCTTAATTTACCTAGAGATGGAAAAGATGCCCTCAAACTTTTAAACTACAGAACACCCACTGG
AACTCATGGAGATGCTGGAGACTTTGCAATGATTGCATATTTTGTGTTGAAGCCAAGATGTTTACAGAAA
GGAAGTTTAACCATACAGCAAGTAAACGACCTTTTAGACTCAATTGCCAGCAATAATTCTGCTAAAAGAA
AAGACCTAATAAAAAAGAGCCTTCTTCAACTTATAACTCAGAGTTCAGCACTTGAGCAAAAGTGGCTTAT
ACGGATGATCATAAAGGATTTAAAGCTTGGTGTTAGTCAGCAAACTATCTTTTCTGTTTTTCATAATGAT
GCTGCTGAGTTGCATAATGTCACTACAGATCTGGAAAAAGTCTGTAGGCAACTGCATGATCCTTCTGTAG
GACTCAGTGATATTTCTATCACTTTATTTTCTGCATTTAAACCAATGCTAGCTGCTATTGCAGATATTGA
GCACATTGAGAAGGATATGAAACATCAGAGTTTCTACATAGAAACCAAGCTAGATGGTGAACGTATGCAA
ATGCACAAAGATGGAGATGTATATAAATACTTCTCTCGAAATGGATATAACTACACTGATCAGTTTGGTG
CTTCTCCTACTGAAGGTTCTCTTACCCCATTCATTCATAATGCATTCAAAGCAGATATACAAATCTGTAT
TCTTGATGGTGAGATGATGGCCTATAATCCTAATACACAAACTTTCATGCAAAAGGGAACTAAGTTTGAT
ATTAAAAGAATGGTAGAGGATTCTGATCTGCAAACTTGTTATTGTGTTTTTGATGTATTGATGGTTAATA
ATAAAAAGCTAGGGCATGAGACTCTGAGAAAGAGGTATGAGATTCTTAGTAGTATTTTTACACCAATTCC
AGGTAGAATAGAAATAGTGCAGAAAACACAAGCTCATACTAAGAATGAAGTAATTGATGCATTGAATGAA
GCAATAGATAAAAGAGAAGAGGGAATTATGGTAAAACAACCTCTATCCATCTACAAGCCAGACAAAAGAG
GTGAAGGGTGGTTAAAAATTAAACCAGAGTATGTCAGTGGACTAATGGATGAATTGGACATTTTAATTGT
TGGAGGATATTGGGGTAAAGGATCACGGGGTGGAATGATGTCTCATTTTCTGTGTGCAGTAGCAGAGAAG
CCCCCTCCTGGTGAGAAGCCATCTGTGTTTCATACTCTCTCTCGTGTTGGGTCTGGCTGCACCATGAAAG
AACTGTATGATCTGGGTTTGAAATTGGCCAAGTATTGGAAGCCTTTTCATAGAAAAGCTCCACCAAGCAG
CATTTTATGTGGAACAGAGAAGCCAGAAGTATACATTGAACCTTGTAATTCTGTCATTGTTCAGATTAAA
GCAGCAGAGATCGTACCCAGTGATATGTATAAAACTGGCTGCACCTTGCGTTTTCCACGAATTGAAAAGA
TAAGAGATGACAAGGAGTGGCATGAGTGCATGACCCTGGACGACCTAGAACAACTTAGGGGGAAGGCATC
TGGTAAGCTCGCATCTAAACACCTTTATATAGGTGGTGATGATGAACCACAAGAAAAAAAGCGGAAAGCT
GCCCCAAAGATGAAGAAAGTTATTGGAATTATTGAGCACTTAAAAGCACCTAACCTTACTAACGTTAACA
AAATTTCTAATATATTTGAAGATGTAGAGTTTTGTGTTATGAGTGGAACAGATAGCCAGCCAAAGCCTGA
CCTGGAGAACAGAATTGCAGAATTTGGTGGTTATATAGTACAAAATCCAGGCCCAGACACGTACTGTGTA
ATTGCAGGGTCTGAGAACATCAGAGTGAAAAACATAATTTTGTCAAATAAACATGATGTTGTCAAGCCTG
CATGGCTTTTAGAATGTTTTAAGACCAAAAGCTTTGTACCATGGCAGCCTCGCTTTATGATTCATATGTG
CCCATCAACCAAAGAACATTTTGCCCGTGAATATGATTGCTATGGTGATAGTTATTTCATTGATACAGAC
TTGAACCAACTGAAGGAAGTATTCTCAGGAATTAAAAATTCTAACGAGCAGACTCCTGAAGAAATGGCTT
CTCTGATTGCTGATTTAGAATATCGGTATTCCTGGGATTGCTCTCCTCTCAGTATGTTTCGACGCCACAC
CGTTTATTTGGACTCGTATGCTGTTATTAATGACCTGAGTACCAAAAATGAGGGGACAAGGTTAGCTATT
AAAGCCTTGGAGCTTCGGTTTCATGGAGCAAAAGTAGTTTCTTGTTTAGCTGAGGGAGTGTCTCATGTAA
TAATTGGGGAAGATCATAGTCGTGTTGCAGATTTTAAAGCTTTTAGAAGAACTTTTAAGAGAAAGTTTAA
AATCCTAAAAGAAAGTTGGGTAACTGATTCAATAGACAAGTGTGAATTACAAGAAGAAAACCAGTATTTG
ATTTAA

Translation (911 aa):
MAASQTSQTVASHVPFADLCSTLERIQKSKGRAEKIRHFREFLDSWRKFHDALHKNHKDVTDSFYPAMRL
ILPQLERERMAYGIKETMLAKLYIELLNLPRDGKDALKLLNYRTPTGTHGDAGDFAMIAYFVLKPRCLQK
GSLTIQQVNDLLDSIASNNSAKRKDLIKKSLLQLITQSSALEQKWLIRMIIKDLKLGVSQQTIFSVFHND
AAELHNVTTDLEKVCRQLHDPSVGLSDISITLFSAFKPMLAAIADIEHIEKDMKHQSFYIETKLDGERMQ
MHKDGDVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKADIQICILDGEMMAYNPNTQTFMQKGTKFD
IKRMVEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFTPIPGRIEIVQKTQAHTKNEVIDALNE
AIDKREEGIMVKQPLSIYKPDKRGEGWLKIKPEYVSGLMDELDILIVGGYWGKGSRGGMMSHFLCAVAEK
PPPGEKPSVFHTLSRVGSGCTMKELYDLGLKLAKYWKPFHRKAPPSSILCGTEKPEVYIEPCNSVIVQIK
AAEIVPSDMYKTGCTLRFPRIEKIRDDKEWHECMTLDDLEQLRGKASGKLASKHLYIGGDDEPQEKKRKA
APKMKKVIGIIEHLKAPNLTNVNKISNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPGPDTYCV
IAGSENIRVKNIILSNKHDVVKPAWLLECFKTKSFVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFIDTD
LNQLKEVFSGIKNSNEQTPEEMASLIADLEYRYSWDCSPLSMFRRHTVYLDSYAVINDLSTKNEGTRLAI
KALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRRTFKRKFKILKESWVTDSIDKCELQEENQYL
I


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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