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Report for CCDS46675.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46675.1 Public Homo sapiens 22 SGSM1 24 110 108 CCDS HistoryNCBI Gene:129049Re-query CCDS DB by CCDS ID:46675.1Re-query CCDS DB by GeneID:129049See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46675.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000400358.9 ENSP00000383211.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000400358.9Link to Ensembl Protein Viewer:ENSP00000383211.4Re-query CCDS DB by Nucleotide ID:ENST00000400358Re-query CCDS DB by Protein ID:ENSP00000383211
Original member Current member NCBI NM_001098497.3 NP_001091967.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001098497.3Link to Protein Sequence:NP_001091967.1Re-query CCDS DB by Nucleotide ID:NM_001098497Re-query CCDS DB by Protein ID:NP_001091967Link to BLAST:NP_001091967.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001091967.1 1093 Q2NKQ1-4 1093 100% 0 0

Chromosomal Locations for CCDS 46675.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 24806326 24806344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24806441 24806484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24844897 24844972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24847634 24847796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24850280 24850432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24854996 24855063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24855285 24855430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24855549 24855680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24859716 24859840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24867093 24867160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24868376 24868539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24868723 24868855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24876577 24876715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24879462 24879526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24884053 24884198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24886600 24886728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24893431 24893613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24895223 24895291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24897972 24898559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24901833 24901957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24905105 24905187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24912643 24912752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24917658 24917754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24919826 24919993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24924186 24924274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3282 nt):
ATGGCCTCGGCCCCCGCGGAGGCGGAGACCCGACAGAGGCTGCTACGCACCGTCAAGAAGGAGGTGAAGC
AGATCATGGAGGAGGCTGTGACACGCAAGTTTGTCCACGAAGACAGCAGCCACATCATCTCCTTCTGTGC
GGCTGTGGAGGCCTGCGTTCTGCACGGGCTTCGGCGGCGGGCGGCTGGCTTCCTACGCAGCAATAAGATT
GCAGCCCTCTTTATGAAAGTGGGCAAGAACTTCCCGCCGGCTGAGGATCTGAGCCGCAAGGTGCAAGACC
TGGAGCAGCTGATCGAGAGCGCGAGAAACCAGATTCAAGGCCTCCAGGAGAATGTGCGGAAGCTGCCGAA
GCTGCCCAACTTGTCCCCACTTGCCATCAAGCATCTGTGGATTCGCACAGCCTTGTTTGAGAAGGTCCTG
GACAAAATTGTGCATTACCTTGTGGAAAACAGCAGTAAATACTATGAGAAGGAAGCTCTCCTGATGGACC
CTGTGGACGGCCCCATCCTTGCATCTTTGTTGGTGGGGCCCTGTGCCCTAGAGTACACCAAGATGAAGAC
TGCAGATCACTTCTGGACCGATCCCTCGGCTGACGAACTTGTCCAGAGGCACCGCATCCACAGCTCCCAC
GTGCGGCAGGACTCGCCCACCAAGCGTCCTGCCCTCTGTATCCAGAAGAGGCATTCCAGTGGCAGCATGG
ATGACCGGCCATCCCTCTCTGCCCGCGACTACGTGGAGTCCCTGCATCAGAACTCCCGTGCCACCCTTCT
CTATGGCAAAAACAACGTTCTTGTTCAGCCGAGGGACGACATGGAGGCTGTGCCAGGGTACCTGTCCCTG
CACCAGACGGCTGACGTCATGACCTTGAAGTGGACACCCAACCAGCTGATGAACGGGTCTGTGGGGGACC
TGGACTATGAGAAGAGCGTCTACTGGGACTATGCCATGACCATCCGCTTGGAGGAGATTGTCTACCTGCA
CTGCCACCAGCAAGTTGACAGCGGCGGGACAGTGGTATTGGTCAGCCAGGACGGGATCCAGAGGCCGCCC
TTCCGCTTCCCCAAGGGCGGGCACCTCCTGCAGTTCCTCTCGTGCCTGGAGAATGGGCTGCTCCCACATG
GGCAGTTGGACCCGCCACTGTGGTCCCAGAGGGGTAAGGGCAAAGTGTTTCCTAAACTGCGCAAGCGAAG
CCCTCAGGGTTCTGCCGAGTCCACATCTTCAGACAAAGATGATGATGAGGCCACGGATTATGTGTTCAGG
ATCATCTACCCTGGCATGCAGTCGGAATTCGTGCCCCAGGATCTGATGGACGTCTCTGTAAGCAACCTCC
CATCCCTGTGGCAGCCCAGTCCCCGGAAGTCCTCCTGTTCATCCTGTTCACAGAGTGGCTCGGCTGATGG
TAGCTCGACCAATGGCTGCAACCATGAGAGGGCTCCCCTGAAACTTCTCTGTGACAATATGAAGTACCAG
ATCCTCTCCAGAGCCTTCTATGGATGGCTGGCCTACTGCAGACACCTGTCCACCGTGAGAACCCACCTAT
CAGCCCTGGTCAATCACATGATCGTGTCTCCAGACTTGCCCTGCGATGCTGGACAGGGACTGACAGCCAG
GATCTGGGAGCAGTACCTTCACGACAGCACAAGTTACGAGGAGCAGGAGCTGCTGCGCCTCATCTACTAC
GGGGGCATCCAGCCTGAGATCCGCAAGGCCGTGTGGCCCTTCCTCCTGGGCCACTACCAGTTCGGGATGA
CGGAAACAGAAAGGAAAGAGGTGGACGAGCAGATTCATGCCTGCTATGCACAGACCATGGCTGAGTGGCT
GGGCTGCGAGGCGATCGTGCGGCAGAGGGAGCGGGAGTCCCATGCGGCCGCCCTGGCCAAATGCTCATCC
GGGGCCAGCTTGGACAGCCACCTGCACCGGATGTTGCACAGGGACTCAACCATCAGCAATGAGTCCTCCC
AGAGCTGCAGTTCGGGCCGCCAGAACATCCGCCTGCACAGCGACTCCAGCAGCAGCACACAGGTGTTTGA
GTCTGTGGATGAGGTGGAGCAGGTGGAGGCTGAAGGCAGATTGGAGGAGAAACAGCCCAAGATCCCCAAT
GGGAACCTAGTGAACGGCACTTGTTCCCCAGACTCGGGTCATCCTTCCTCCCATAACTTCTCCTCGGGCC
TCTCAGAGCACTCAGAGCCCAGTCTGAGCACAGAAGACAGTGTCTTGGACGCCCAGCGGAACACCCCCAC
GGTGCTGCGACCTAGGGATGGCAGCGTGGATGACAGGCAGAGCAGCGAGGCCACCACATCTCAGGATGAG
GCTCCCCGGGAGGAGCTGGCCGTGCAGGACAGCCTGGAGAGTGACCTCCTGGCCAACGAGAGCATGGACG
AGTTCATGTCCATCACGGGCAGCCTGGACATGGCCCTGCCTGAAAAGGACGATGTTGTGATGGAGGGCTG
GAGGAGCAGCGAGACAGAGAAACATGGCCAGGCGGACAGTGAGGACAACCTCTCGGAGGAGCCTGAGATG
GAAAGTCTCTTCCCTGCCCTGGCTTCTCTGGCTGTGACTACTTCTGCCAACGAGGTGTCCCCTGTGTCTT
CCAGCGGCGTCACCTACTCTCCAGAGCTGCTGGATCTGTACACGGTGAACCTGCACCGCATCGAGAAGGA
TGTGCAGAGGTGCGACCGCAACTACTGGTACTTCACGCCCGCCAACTTGGAGAAGCTGCGTAACATCATG
TGCAGCTACATCTGGCAGCACATTGAGATCGGCTATGTCCAGGGCATGTGTGATCTTCTGGCTCCACTGC
TGGTCATTCTGGATGATGAGGCCCTTGCCTTCAGCTGCTTCACGGAGCTCATGAAGAGGATGAACCAGAA
CTTCCCCCACGGAGGCGCCATGGACACGCACTTTGCAAACATGAGATCGTTGATCCAGATCCTGGACTCA
GAGCTGTTTGAGCTGATGCATCAGAACGGGGACTATACTCACTTCTACTTCTGCTACCGCTGGTTCCTGC
TGGATTTCAAGCGAGAACTCGTCTATGATGACGTCTTCTTGGTCTGGGAGACCATCTGGGCAGCCAAACA
CGTCTCCTCTGCGCACTACGTCCTGTTCATTGCGCTGGCTCTGGTGGAAGTCTACCGTGACATCATTTTG
GAGAACAACATGGATTTCACAGACATCATCAAATTCTTTAATGAAATGGCTGAGCGACACAACACCAAGC
AAGTCCTGAAGCTGGCGCGGGACCTCGTGTACAAGGTGCAGACTCTGATTGAGAACAAGTGA

Translation (1093 aa):
MASAPAEAETRQRLLRTVKKEVKQIMEEAVTRKFVHEDSSHIISFCAAVEACVLHGLRRRAAGFLRSNKI
AALFMKVGKNFPPAEDLSRKVQDLEQLIESARNQIQGLQENVRKLPKLPNLSPLAIKHLWIRTALFEKVL
DKIVHYLVENSSKYYEKEALLMDPVDGPILASLLVGPCALEYTKMKTADHFWTDPSADELVQRHRIHSSH
VRQDSPTKRPALCIQKRHSSGSMDDRPSLSARDYVESLHQNSRATLLYGKNNVLVQPRDDMEAVPGYLSL
HQTADVMTLKWTPNQLMNGSVGDLDYEKSVYWDYAMTIRLEEIVYLHCHQQVDSGGTVVLVSQDGIQRPP
FRFPKGGHLLQFLSCLENGLLPHGQLDPPLWSQRGKGKVFPKLRKRSPQGSAESTSSDKDDDEATDYVFR
IIYPGMQSEFVPQDLMDVSVSNLPSLWQPSPRKSSCSSCSQSGSADGSSTNGCNHERAPLKLLCDNMKYQ
ILSRAFYGWLAYCRHLSTVRTHLSALVNHMIVSPDLPCDAGQGLTARIWEQYLHDSTSYEEQELLRLIYY
GGIQPEIRKAVWPFLLGHYQFGMTETERKEVDEQIHACYAQTMAEWLGCEAIVRQRERESHAAALAKCSS
GASLDSHLHRMLHRDSTISNESSQSCSSGRQNIRLHSDSSSSTQVFESVDEVEQVEAEGRLEEKQPKIPN
GNLVNGTCSPDSGHPSSHNFSSGLSEHSEPSLSTEDSVLDAQRNTPTVLRPRDGSVDDRQSSEATTSQDE
APREELAVQDSLESDLLANESMDEFMSITGSLDMALPEKDDVVMEGWRSSETEKHGQADSEDNLSEEPEM
ESLFPALASLAVTTSANEVSPVSSSGVTYSPELLDLYTVNLHRIEKDVQRCDRNYWYFTPANLEKLRNIM
CSYIWQHIEIGYVQGMCDLLAPLLVILDDEALAFSCFTELMKRMNQNFPHGGAMDTHFANMRSLIQILDS
ELFELMHQNGDYTHFYFCYRWFLLDFKRELVYDDVFLVWETIWAAKHVSSAHYVLFIALALVEVYRDIIL
ENNMDFTDIIKFFNEMAERHNTKQVLKLARDLVYKVQTLIENK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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