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Report for CCDS31907.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31907.1 Public Homo sapiens 12 DDX54 24 110 108 CCDS HistoryNCBI Gene:79039Re-query CCDS DB by CCDS ID:31907.1Re-query CCDS DB by GeneID:79039See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31907.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306014.10 ENSP00000304072.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000306014.10Link to Ensembl Protein Viewer:ENSP00000304072.5Re-query CCDS DB by Nucleotide ID:ENST00000306014Re-query CCDS DB by Protein ID:ENSP00000304072
Original member Current member NCBI NM_024072.4 NP_076977.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024072.4Link to Protein Sequence:NP_076977.3Re-query CCDS DB by Nucleotide ID:NM_024072Re-query CCDS DB by Protein ID:NP_076977Link to BLAST:NP_076977.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076977.3 881 Q8TDD1-1 881 100% 0 0

Chromosomal Locations for CCDS 31907.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 113158877 113159109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113161270 113161382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113161893 113161997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113162932 113163045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113163132 113163274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113164067 113164285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113165644 113165717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113165802 113166032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113169770 113169904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113172353 113172563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113174640 113174771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113174875 113174936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113175036 113175157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113176840 113176935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113177052 113177093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113178977 113179026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113179143 113179331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113179935 113180005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113180929 113181058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113185278 113185451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2646 nt):
ATGGCGGCCGACAAGGGCCCGGCGGCTGGACCTCGGTCGCGAGCTGCCATGGCCCAGTGGAGGAAGAAGA
AAGGGCTCCGGAAGCGCCGAGGCGCGGCCTCCCAGGCCCGCGGCAGCGACTCGGAGGACGGCGAGTTTGA
GATCCAGGCGGAAGATGACGCCCGGGCCCGGAAGCTGGGACCTGGAAGACCCCTGCCCACCTTCCCCACC
TCGGAATGCACCTCGGATGTGGAGCCGGACACCCGGGAGATGGTGCGTGCCCAGAACAAGAAGAAGAAGA
AGTCTGGAGGCTTCCAGTCCATGGGCCTGAGCTACCCGGTGTTCAAAGGCATCATGAAGAAGGGGTACAA
GGTGCCAACACCCATCCAGAGGAAGACCATCCCGGTGATCTTGGATGGCAAGGACGTGGTGGCCATGGCC
CGGACGGGCAGTGGCAAGACAGCCTGCTTCCTCCTCCCAATGTTCGAGCGGCTCAAGACCCACAGTGCCC
AGACCGGGGCCCGCGCCCTCATCCTCTCGCCGACCCGAGAGCTGGCCCTGCAGACCCTGAAGTTCACTAA
GGAGCTAGGCAAGTTCACTGGCCTCAAGACTGCCCTGATCCTGGGTGGAGACAGGATGGAAGACCAGTTT
GCAGCCCTGCACGAAAATCCCGACATAATTATTGCCACGCCCGGACGGTTGGTGCATGTGGCTGTGGAAA
TGAGCCTGAAGCTGCAGAGTGTGGAATACGTGGTGTTCGATGAAGCTGACCGGCTTTTTGAAATGGGTTT
CGCAGAGCAGCTGCAGGAGATCATCGCCCGCCTCCCCGGGGGCCACCAGACGGTGCTGTTCTCCGCCACG
CTGCCCAAACTGCTGGTGGAATTTGCCCGGGCTGGCCTCACGGAGCCCGTGCTCATCCGGCTTGACGTGG
ATACCAAGCTCAACGAGCAGCTGAAGACCTCCTTCTTCCTCGTGCGGGAGGACACCAAGGCTGCCGTGCT
GCTCCACCTGCTGCACAACGTGGTGCGGCCCCAGGACCAGACCGTGGTGTTTGTGGCCACGAAGCACCAC
GCCGAGTACCTCACTGAGCTGCTGACGACCCAGCGGGTGAGCTGCGCCCACATCTACAGTGCCCTAGACC
CGACAGCCCGCAAGATCAATCTCGCCAAATTCACGCTTGGCAAGTGCTCCACTCTCATTGTGACTGACCT
GGCCGCCCGAGGCCTGGACATCCCGCTGCTGGACAATGTCATCAACTACAGCTTCCCCGCCAAGGGCAAA
CTCTTCCTGCACCGCGTGGGCCGTGTGGCTCGGGCTGGCCGAAGTGGCACAGCCTACTCCTTGGTGGCCC
CTGATGAAATCCCCTACCTGCTGGATCTGCACCTGTTCCTGGGCCGCTCCCTCACCCTCGCCCGACCCCT
CAAGGAGCCCTCAGGTGTGGCCGGTGTGGATGGCATGCTGGGTCGGGTGCCACAGAGTGTGGTGGACGAG
GAGGACAGTGGTCTGCAGAGCACCCTGGAGGCATCGCTGGAGCTACGGGGCCTGGCCCGCGTTGCTGATA
ACGCCCAGCAGCAGTATGTGCGCTCACGCCCGGCGCCCTCGCCTGAGTCCATCAAGAGGGCCAAGGAGAT
GGACCTTGTGGGGCTGGGCCTGCACCCCCTCTTCAGCTCGCGTTTTGAGGAGGAGGAGCTGCAGCGGCTG
AGGCTGGTGGACAGCATAAAGAACTACCGCTCCCGGGCGACTATCTTTGAGATCAACGCCTCCAGCCGAG
ACCTGTGCAGCCAGGTGATGCGCGCCAAGCGGCAGAAGGACCGCAAGGCCATCGCCCGCTTCCAGCAGGG
ACAGCAGGGGCGGCAGGAGCAGCAGGAGGGCCCAGTGGGCCCAGCCCCGAGCCGCCCAGCACTGCAGGAG
AAGCAGCCTGAGAAGGAGGAGGAGGAGGAGGCGGGAGAGAGTGTGGAGGACATTTTCTCAGAGGTCGTGG
GCCGGAAGCGGCAGCGGTCAGGACCCAACAGGGGAGCCAAGAGGCGGAGGGAGGAGGCCCGGCAGCGGGA
CCAGGAATTCTACATCCCCTACCGGCCCAAGGACTTTGACAGCGAGCGGGGCCTGAGCATCAGCGGGGAA
GGGGGAGCCTTTGAGCAGCAGGCAGCTGGCGCTGTCCTGGACTTGATGGGGGATGAAGCCCAGAACCTGA
CGAGGGGCCGGCAGCAGCTCAAGTGGGACCGTAAGAAGAAGCGGTTTGTGGGACAGTCAGGACAGGAAGA
CAAGAAGAAGATTAAGACAGAGAGCGGCCGCTACATCAGCAGCTCCTACAAGCGAGACCTCTATCAGAAG
TGGAAACAGAAACAGAAAATTGATGATCGTGACTCGGACGAAGAAGGGGCATCTGACCGGCGAGGCCCAG
AGCGAAGAGGTGGGAAGCGAGACCGTGGCCAAGGTGCATCCCGGCCCCACGCCCCAGGCACCCCTGCAGG
CCGAGTCCGCCCGGAACTCAAGACCAAGCAGCAGATCCTGAAGCAGCGGCGCCGGGCCCAGAAGCTGCAC
TTCCTGCAGCGTGGTGGCCTCAAGCAGCTCTCTGCCCGCAACCGCCGCCGCGTCCAGGAGCTGCAGCAGG
GCGCCTTCGGCCGGGGTGCCCGCTCCAAGAAGGGCAAGATGCGGAAGAGGATGTGA

Translation (881 aa):
MAADKGPAAGPRSRAAMAQWRKKKGLRKRRGAASQARGSDSEDGEFEIQAEDDARARKLGPGRPLPTFPT
SECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMA
RTGSGKTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQF
AALHENPDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVLFSAT
LPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLHNVVRPQDQTVVFVATKHH
AEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGK
LFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHLFLGRSLTLARPLKEPSGVAGVDGMLGRVPQSVVDE
EDSGLQSTLEASLELRGLARVADNAQQQYVRSRPAPSPESIKRAKEMDLVGLGLHPLFSSRFEEEELQRL
RLVDSIKNYRSRATIFEINASSRDLCSQVMRAKRQKDRKAIARFQQGQQGRQEQQEGPVGPAPSRPALQE
KQPEKEEEEEAGESVEDIFSEVVGRKRQRSGPNRGAKRRREEARQRDQEFYIPYRPKDFDSERGLSISGE
GGAFEQQAAGAVLDLMGDEAQNLTRGRQQLKWDRKKKRFVGQSGQEDKKKIKTESGRYISSSYKRDLYQK
WKQKQKIDDRDSDEEGASDRRGPERRGGKRDRGQGASRPHAPGTPAGRVRPELKTKQQILKQRRRAQKLH
FLQRGGLKQLSARNRRRVQELQQGAFGRGARSKKGKMRKRM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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