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Report for CCDS15369.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15369.1 Public Mus musculus 1 Lamc2 23 108 98 CCDS HistoryNCBI Gene:16782Re-query CCDS DB by CCDS ID:15369.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15369.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027753.12 ENSMUSP00000027753.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027753.12Link to Ensembl Protein Viewer:ENSMUSP00000027753.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027753Re-query CCDS DB by Protein ID:ENSMUSP00000027753
Original member Current member EBI ENSMUST00000185356.6 ENSMUSP00000140514.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000185356.6Link to Ensembl Protein Viewer:ENSMUSP00000140514.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000185356Re-query CCDS DB by Protein ID:ENSMUSP00000140514
Original member Current member NCBI NM_008485.3 NP_032511.3 Accepted alive Link to Nucleotide Sequence:NM_008485.3Link to Protein Sequence:NP_032511.3Re-query CCDS DB by Nucleotide ID:NM_008485Re-query CCDS DB by Protein ID:NP_032511Link to BLAST:NP_032511.3

Chromosomal Locations for CCDS 15369.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 153124030 153124283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153126816 153126915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153127006 153127164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153128957 153129156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153130036 153130150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153130650 153130799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153131823 153131967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153133599 153133748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153134777 153134856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153136698 153136903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153137191 153137353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153139726 153139871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153141526 153141771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153143726 153143908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153144514 153144732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153145639 153145751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153148928 153149117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153150744 153150866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153152037 153152173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153154392 153154490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153158852 153158987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153166119 153166307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153185909 153185987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3582 nt):
ATGCCTGCGCTCTGGCTCAGCTGCTGCCTTGGTGTCGCGCTCCTGCTGCCCGCAGCCCAGGCCACCTCCA
GGAGGGAAGTCTGTGATTGCAATGGGAAGTCCAGGCAATGTGTCTTTGATCAGGAGCTCCATCGACAGAC
AGGCAGCGGGTTCCGTTGCCTCAACTGCAATGACAATACAGCGGGGGTTCACTGCGAGCGGTGCAGGGAG
GGGTTTTACCGACATCGAGACAGAGACCGCTGCCTACCCTGCAACTGCCACTCAAAGGGTTCCCTCAGTG
CTGGATGTGACAACTCTGGACAATGCAGGTGTAAGCCAGGTGTGACAGGACAAAGATGTGACCGATGTCA
GCCAGGCTTCCATATGCTCACCGATGCTGGATGCACCCGAGACCAGGGGCAACTAGATTCCAAGTGTGAC
TGTGACCCAGCTGGCATCTCTGGACCCTGTGATTCTGGCCGATGTGTCTGCAAACCAGCCGTCACTGGAG
AGCGCTGTGATAGGTGCCGACCAGGCTACTATCATCTGGACCGGGCAAACCCTGAGGGCTGTACCCAGTG
TTTCTGCTATGGGCATTCAGCCAGCTGCCACGCCTCTGCCGACTTCAGTGTCCACAAAATCACTTCAACT
TTCAGTCAGGATGTGGATGGTTGGAAGGCGGTTCAGAGAAACGGGGCACCTGCAAAACTCCACTGGTCAC
AGCGCCATCGGGACGTGTTTAGTTCTGCCCGAAGATCAGACCCCGTCTATTTCGTGGCCCCTGCCAAATT
CCTCGGTAACCAGCAAGTGAGTTACGGGCAGAGCCTGTCTTTTGACTACCGCGTGGACAGAGGAGGTAGA
CAGCCGTCTGCCTACGATGTGATCCTGGAAGGTGCTGGTCTACAGATCAGAGCTCCTCTGATGGCTCCAG
GCAAGACACTTCCCTGTGGGATCACAAAGACTTACACATTCAGACTGAATGAACATCCAAGCAGTCACTG
GAGTCCCCAGCTGAGTTATTTCGAATATCGAAGGTTACTGCGGAACCTCACAGCCCTCCTGATCCGAGCT
ACGTACGGAGAATATAGTACAGGGTACATTGATAACGTGACCCTGGTTTCAGCCCGCCCTGTCTCTGGAG
CCCCAGCCCCTTGGGTTGAACGTTGTGTATGCCCTGCTGGGTACAAGGGACAATTCTGCCAGGAATGTGC
TTCTGGTTACAAAAGAGATTCGGCAAGATTGGGGCCTTTTGGCGCCTGTGTTCCCTGTAACTGCCAAGGG
GGAGGGGCCTGTGATCCAGACACGGGAGATTGCTACTCGGGGGACGAGAATCCTGACATTGAGTGTGCTG
ACTGTCCCATCGGTTTCTACAATGACCCACATGACCCCCGCAGCTGCAAGCCATGTCCCTGTCACAATGG
GTTCAGCTGTTCAGTGATGCCTGAGACAGAGGAGGTGGTGTGTAACAACTGTCCCCCTGGGGTCACAGGT
GCCCGCTGTGAGCTCTGTGCTGATGGCTTCTTTGGGGATCCCTTTGGGGAACGTGGCCCAGTGAGGCCTT
GTCAACGCTGCCAATGCAACAACAACGTGGACCCCAATGCCTCTGGGAACTGTGACCAGTTGACAGGCAG
ATGCTTGAAATGTATCTACAACACGGCCGGTGTCTACTGTGACCAGTGCAAAGCAGGTTACTTTGGAGAC
CCATTGGCTCCCAACCCAGCAGACAAGTGTCGAGCTTGCAACTGCAGCCCCATGGGCTCGGAGCCTGGAG
AGTGTCGAGGTGATGGCAGCTGTGTTTGCAAGCCAGGCTTTGGCGGCCTCAACTGTGATCACGCAGCCCT
AACCAGTTGTCCTGCTTGCTACAATCAAGTGAAGATTCAGATGGACCAGTTTACCCAGCAGCTCCAGAGC
CTGGAGGCCCTGGTTTCAAAGGCTCAGGGTGGTGGTGGTGGTGGTACAGTCCCCAGTGGGGAGCTGGAAG
GCAGGATGCAGCAGGCTGAGCAGGCCCTTCGAGACATTCTAAGAGAAGCTCAGATTTCAGAAGGGGCAAT
GAGAGCCCTTGGCTTCCGGCTGGCCAAGGCAAGGAGCCAAGAGAACGACTACAAGACCCGCCTGGATGAC
CTCAAGATGACTGCAGAAAGGATCCGGGCCCTGGGCAGTCAGCATCAGAACAGAGTTCAGGATACGAGCA
GACTCATCTCTCAGATGCGCCTGAGTCTGGCAGGAAGCGAAGCTTCCCTGCAAAACACTAATATCCATTC
TTCTGAGCACTACGTGGGGCCGAATGGATTTAAAAGTCTGGCTCAGGAGGCTACAAGATTGGCAGACAGC
CACGCTGAGTCAGCTAACGCAATGAAGCAACTAGCAAGGGAAACTGAGGACTACTCCAAACAAGCACTTT
CATTGGCCCGCAAGGCTCTGAGTGGAGGAGGCGGAAGTGGCGTCTTGGACAGCTCCGTGGTACAAGGTCT
TATGGGAAAATTAGAGAAAACCAAGTCCCTGAGCCAGCAGCTGTCAAGGGAGGGCACCCAAGCCGACATT
GAAGCTGATAGGTCGTATCAGCACAGTCTCCGCCTCCTGGATTCTGCCTCTCAGCTTCAGGGAGTCAGTG
ATCTGTCCTTTCAGGTGGAAGCAAAGAGGATCAGACAAAAGGCTGATTCTCTCTCAAACCTGGTGACCAG
ACAAACGGATGCATTCACGCGTGTGCGAAACAATCTGGGGAACTGGGAAAAAGAAACACGGCAGCTTTTA
CAGACTGGAAAGGATAGGAGACAGACTTCAGATCAGCTGCTTTCCCGTGCCAACCTTGCTAAAAACAGAG
CCCAAGAAGCGCTAAGTATGGGCAATGCCACTTTTTATGAAGTTGAGAACATCCTGAAGAACCTCCGAGA
GTTTGATCTGCAGGTTGAAGACAGAAAAGCAGAGGCTGAAGAGGCCATGAAGAGACTCTCCTCTATTAGC
CAGAAGGTTGCAGATGCCAGTGACAAGACCCAGCAAGCAGAAACGGCCCTGGGGAGCGCCACTGCCGACA
CCCAACGGGCAAAGAACGCAGCTAGGGAGGCCCTGGAGATCAGCAGCGAGATAGAGCAGGAGATAGGGAG
TCTGAACTTGGAAGCTAATGTGACAGCAGATGGGGCCTTGGCCATGGAGAAGGGACTGGCCACTCTGAAG
AGCGAGATGAGAGAGATGGAGGGGGAGCTGGCCAGAAAGGAGCTGGAGTTTGACACGGATAAGGACACGG
TGCAGCTGGTGATTACTGAAGCCCAGCAAGCTGATGCCAGAGCCACGAGTGCCGGAGTTACCATCCAAGA
CACACTCAACACATTGGACGGCATCCTACACCTCATAGACCAGCCTGGCAGTGTGGATGAAGAAGGGATG
ATGCTATTAGAACAAGGGCTTTTCCAAGCCAAGACCCAGATCAACAGTCGACTTCGGCCCTTGATGTCTG
ACCTGGAGGAGAGGGTGCGTCGGCAGAGGAACCACCTCCATCTGCTGGAGACCAGCATAGATGGAATTCT
AGCTGATGTGAAGAACCTGGAGAACATTCGAGACAACCTGCCCCCAGGCTGCTACAATACCCAAGCTCTT
GAGCAACAGTGA

Translation (1193 aa):
MPALWLSCCLGVALLLPAAQATSRREVCDCNGKSRQCVFDQELHRQTGSGFRCLNCNDNTAGVHCERCRE
GFYRHRDRDRCLPCNCHSKGSLSAGCDNSGQCRCKPGVTGQRCDRCQPGFHMLTDAGCTRDQGQLDSKCD
CDPAGISGPCDSGRCVCKPAVTGERCDRCRPGYYHLDRANPEGCTQCFCYGHSASCHASADFSVHKITST
FSQDVDGWKAVQRNGAPAKLHWSQRHRDVFSSARRSDPVYFVAPAKFLGNQQVSYGQSLSFDYRVDRGGR
QPSAYDVILEGAGLQIRAPLMAPGKTLPCGITKTYTFRLNEHPSSHWSPQLSYFEYRRLLRNLTALLIRA
TYGEYSTGYIDNVTLVSARPVSGAPAPWVERCVCPAGYKGQFCQECASGYKRDSARLGPFGACVPCNCQG
GGACDPDTGDCYSGDENPDIECADCPIGFYNDPHDPRSCKPCPCHNGFSCSVMPETEEVVCNNCPPGVTG
ARCELCADGFFGDPFGERGPVRPCQRCQCNNNVDPNASGNCDQLTGRCLKCIYNTAGVYCDQCKAGYFGD
PLAPNPADKCRACNCSPMGSEPGECRGDGSCVCKPGFGGLNCDHAALTSCPACYNQVKIQMDQFTQQLQS
LEALVSKAQGGGGGGTVPSGELEGRMQQAEQALRDILREAQISEGAMRALGFRLAKARSQENDYKTRLDD
LKMTAERIRALGSQHQNRVQDTSRLISQMRLSLAGSEASLQNTNIHSSEHYVGPNGFKSLAQEATRLADS
HAESANAMKQLARETEDYSKQALSLARKALSGGGGSGVLDSSVVQGLMGKLEKTKSLSQQLSREGTQADI
EADRSYQHSLRLLDSASQLQGVSDLSFQVEAKRIRQKADSLSNLVTRQTDAFTRVRNNLGNWEKETRQLL
QTGKDRRQTSDQLLSRANLAKNRAQEALSMGNATFYEVENILKNLREFDLQVEDRKAEAEEAMKRLSSIS
QKVADASDKTQQAETALGSATADTQRAKNAAREALEISSEIEQEIGSLNLEANVTADGALAMEKGLATLK
SEMREMEGELARKELEFDTDKDTVQLVITEAQQADARATSAGVTIQDTLNTLDGILHLIDQPGSVDEEGM
MLLEQGLFQAKTQINSRLRPLMSDLEERVRRQRNHLHLLETSIDGILADVKNLENIRDNLPPGCYNTQAL
EQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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