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Report for CCDS52458.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52458.1 Public Mus musculus 7 Igf2 23 108 98 CCDS HistoryNCBI Gene:16002Re-query CCDS DB by CCDS ID:52458.1Re-query CCDS DB by GeneID:16002See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52458.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000033.11 ENSMUSP00000000033.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000033.11Link to Ensembl Protein Viewer:ENSMUSP00000000033.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000000033Re-query CCDS DB by Protein ID:ENSMUSP00000000033
Original member Current member EBI ENSMUST00000097936.8 ENSMUSP00000095549.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097936.8Link to Ensembl Protein Viewer:ENSMUSP00000095549.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000097936Re-query CCDS DB by Protein ID:ENSMUSP00000095549
Original member Current member EBI ENSMUST00000105935.7 ENSMUSP00000101555.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105935.7Link to Ensembl Protein Viewer:ENSMUSP00000101555.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105935Re-query CCDS DB by Protein ID:ENSMUSP00000101555
Original member Current member EBI ENSMUST00000105936.7 ENSMUSP00000101556.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105936.7Link to Ensembl Protein Viewer:ENSMUSP00000101556.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105936Re-query CCDS DB by Protein ID:ENSMUSP00000101556
Original member Current member NCBI NM_001122736.2 NP_001116208.1 Accepted alive Link to Nucleotide Sequence:NM_001122736.2Link to Protein Sequence:NP_001116208.1Re-query CCDS DB by Nucleotide ID:NM_001122736Re-query CCDS DB by Protein ID:NP_001116208Link to BLAST:NP_001116208.1
Original member Current member NCBI NM_001122737.2 NP_001116209.1 Accepted alive Link to Nucleotide Sequence:NM_001122737.2Link to Protein Sequence:NP_001116209.1Re-query CCDS DB by Nucleotide ID:NM_001122737Re-query CCDS DB by Protein ID:NP_001116209Link to BLAST:NP_001116209.1
Original member Current member NCBI NM_001315488.1 NP_001302417.1 Accepted alive Link to Nucleotide Sequence:NM_001315488.1Link to Protein Sequence:NP_001302417.1Re-query CCDS DB by Nucleotide ID:NM_001315488Re-query CCDS DB by Protein ID:NP_001302417Link to BLAST:NP_001302417.1
Original member Current member NCBI NM_001315489.1 NP_001302418.1 Accepted alive Link to Nucleotide Sequence:NM_001315489.1Link to Protein Sequence:NP_001302418.1Re-query CCDS DB by Nucleotide ID:NM_001315489Re-query CCDS DB by Protein ID:NP_001302418Link to BLAST:NP_001302418.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116208.1 180 P09535-1 180 100% 0 0
NP_001116209.1 180 P09535-1 180 100% 0 0
NP_001302417.1 180 P09535-1 180 100% 0 0
NP_001302418.1 180 P09535-1 180 100% 0 0

Chromosomal Locations for CCDS 52458.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 142653816 142654052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142654300 142654448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142655654 142655810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (543 nt):
ATGGGGATCCCAGTGGGGAAGTCGATGTTGGTGCTTCTCATCTCTTTGGCCTTCGCCTTGTGCTGCATCG
CTGCTTACGGCCCCGGAGAGACTCTGTGCGGAGGGGAGCTTGTTGACACGCTTCAGTTTGTCTGTTCGGA
CCGCGGCTTCTACTTCAGCAGGCCTTCAAGCCGTGCCAACCGTCGCAGCCGTGGCATCGTGGAAGAGTGC
TGCTTCCGCAGCTGCGACCTGGCCCTCCTGGAGACATACTGTGCCACCCCCGCCAAGTCCGAGAGGGACG
TGTCTACCTCTCAGGCCGTACTTCCGGACGACTTCCCCAGATACCCCGTGGGCAAGTTCTTCCAATATGA
CACCTGGAGACAGTCCGCGGGACGCCTGCGCAGAGGCCTGCCTGCCCTCCTGCGTGCCCGCCGGGGTCGC
ATGCTTGCCAAAGAGCTCAAAGAGTTCAGAGAGGCCAAACGTCATCGTCCCCTGATCGTGTTACCACCCA
AAGACCCCGCCCACGGGGGAGCCTCTTCGGAGATGTCCAGCAACCATCAGTGA

Translation (180 aa):
MGIPVGKSMLVLLISLAFALCCIAAYGPGETLCGGELVDTLQFVCSDRGFYFSRPSSRANRRSRGIVEEC
CFRSCDLALLETYCATPAKSERDVSTSQAVLPDDFPRYPVGKFFQYDTWRQSAGRLRRGLPALLRARRGR
MLAKELKEFREAKRHRPLIVLPPKDPAHGGASSEMSSNHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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