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Report for CCDS28426.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28426.1 Public Mus musculus 17 Vmn1r226 23 108 98 CCDS HistoryNCBI Gene:171225Re-query CCDS DB by CCDS ID:28426.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28426.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061756.3 ENSMUSP00000058266.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061756.3Link to Ensembl Protein Viewer:ENSMUSP00000058266.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000061756Re-query CCDS DB by Protein ID:ENSMUSP00000058266
Original member Current member EBI ENSMUST00000232708.1 ENSMUSP00000156517.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232708.1Link to Ensembl Protein Viewer:ENSMUSP00000156517.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232708Re-query CCDS DB by Protein ID:ENSMUSP00000156517
Original member Current member EBI ENSMUST00000233159.1 ENSMUSP00000156658.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233159.1Link to Ensembl Protein Viewer:ENSMUSP00000156658.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233159Re-query CCDS DB by Protein ID:ENSMUSP00000156658
Original member Current member EBI ENSMUST00000233808.1 ENSMUSP00000156839.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233808.1Link to Ensembl Protein Viewer:ENSMUSP00000156839.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233808Re-query CCDS DB by Protein ID:ENSMUSP00000156839
Original member Current member EBI ENSMUST00000233722.1 ENSMUSP00000156912.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233722.1Link to Ensembl Protein Viewer:ENSMUSP00000156912.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233722Re-query CCDS DB by Protein ID:ENSMUSP00000156912
Original member Current member EBI ENSMUST00000232818.1 ENSMUSP00000156925.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232818.1Link to Ensembl Protein Viewer:ENSMUSP00000156925.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232818Re-query CCDS DB by Protein ID:ENSMUSP00000156925
Original member Current member EBI ENSMUST00000233959.1 ENSMUSP00000156961.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233959.1Link to Ensembl Protein Viewer:ENSMUSP00000156961.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233959Re-query CCDS DB by Protein ID:ENSMUSP00000156961
Original member Current member NCBI NM_134191.1 NP_598952.1 Accepted alive Link to Nucleotide Sequence:NM_134191.1Link to Protein Sequence:NP_598952.1Re-query CCDS DB by Nucleotide ID:NM_134191Re-query CCDS DB by Protein ID:NP_598952Link to BLAST:NP_598952.1

Chromosomal Locations for CCDS 28426.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 20687508 20688404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGGACTTGAGGACCATGATAGTTGGAATAGTGCTCTCACTTCAGACGGCACTTGGTATTCTAGGAAACG
TCTCTCTTCTTTTCTACTACCTAATCATTTATTACAATGAACACACAATGAAGAAAATAGATATGATTCT
TATACATGTGTTCACATCCAACTTCTTAACTATTCTTTCCAAAGGACTCCCTGAAGTAGTGAAAGCTTTT
GGGTGGAAGCAGTTATTCAGTGATGTTGGGTGCAAACTTACTAATTATTTTCAAAGACTAGCCAGGAGTA
TGTCCATCAGCACCACCTGTTTCTTGAGTGTCTTTCAAGCAATCACCATTAGCCCCAGGAACTCCTGCTT
GAAGGAATATAAAACCAAAACTACAAAGTTTATGGGCCTGTTCTTTTCTCTCTGCTGGATCCTTTTCATT
CTAGTAAATATGCTTTTCCCCATTTATACAGCTACCAATAGGAATAAAAAAAATAAGACACAAAAGAGAG
ACTTTGAATTCTGCCACTCTATAGGTCGTGACAAACTAGTAGATATAATGTATACAGCATTTTGTGTATT
TCCTGAAGTCATATTTTCTCTGCTCATTGTAAGTTCCAGTGCTTTTATGATTTTCATACTTTATGGACAT
AAGAAGAGGGTTCAACACACTCTCCACATTCATGCCTCCATCAGAAACTCTGCTGAAAACAGAGCCACAC
ACAACATCTTGACTCTGGTTTGTACATTTCTAGCATTTTATACTCTCTCTTCAATTTTACAAGGCTATAT
TGCTCTTTCAAATAATCCCAGTTGGTGGGTAATGAATATCACAGCAATAATTTCCATGTGTTTTCCTACA
TTAGGCCCTATTGTGATAAGTCCTGATTTCGCTATTTCCAGATTCTGCTTTACCTAG

Translation (298 aa):
MDLRTMIVGIVLSLQTALGILGNVSLLFYYLIIYYNEHTMKKIDMILIHVFTSNFLTILSKGLPEVVKAF
GWKQLFSDVGCKLTNYFQRLARSMSISTTCFLSVFQAITISPRNSCLKEYKTKTTKFMGLFFSLCWILFI
LVNMLFPIYTATNRNKKNKTQKRDFEFCHSIGRDKLVDIMYTAFCVFPEVIFSLLIVSSSAFMIFILYGH
KKRVQHTLHIHASIRNSAENRATHNILTLVCTFLAFYTLSSILQGYIALSNNPSWWVMNITAIISMCFPT
LGPIVISPDFAISRFCFT


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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