NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS36616.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36616.1 Public Mus musculus 13 Vmn1r208 23 108 98 CCDS HistoryNCBI Gene:171252Re-query CCDS DB by CCDS ID:36616.1See the combined annotation on chromosome 13 in Sequence Viewer

Public Note for CCDS 36616.1
This vomeronasal receptor gene lacks transcript support, possibly because vomeronasal receptor genes are expressed in only a very small fraction of neurons, and thus, transcript evidence may be difficult to detect for all functional genes. This gene, also known as V1rh9, is a member of the V1rh sub-cluster, as described in PMID:11802169. While the ORF is intact compared to other V1r genes, the lack of transcript and functional data for this and other similar genes makes it difficult to determine if these represent functional genes or pseudogenes. Both PMIDs 11802169 and 19952141 consider this gene to be functional.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 36616.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000124841.2 ENSMUSP00000128942.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000124841.2Link to Ensembl Protein Viewer:ENSMUSP00000128942.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000124841Re-query CCDS DB by Protein ID:ENSMUSP00000128942
Original member Current member EBI ENSMUST00000227136.1 ENSMUSP00000153904.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227136.1Link to Ensembl Protein Viewer:ENSMUSP00000153904.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227136Re-query CCDS DB by Protein ID:ENSMUSP00000153904
Original member Current member NCBI NM_134218.1 NP_598979.1 Accepted alive Link to Nucleotide Sequence:NM_134218.1Link to Protein Sequence:NP_598979.1Re-query CCDS DB by Nucleotide ID:NM_134218Re-query CCDS DB by Protein ID:NP_598979Link to BLAST:NP_598979.1

Chromosomal Locations for CCDS 36616.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 22772399 22773325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGGTTTTGAAGTATATTAATAAGGTAAATAAAATCTCTCTCTTTATGACTGTGGTCGGTACTCTGGGGA
ACATGTTTGTTTCTGTGAATTATACTTTCAGTTATTGGGGAAGTTCTGAGAAGAAACCCATATACCTTAT
TCTGATCCATCTGGCTTTTACAAACATCCTAATACTTCTTACCAAAGGATTGCCAAAGACTATTTTAGCT
TTTGGATTGAGAAATTTCTTAGATGATATAGGCTGTAAGATCATTGTTTACCTGGAGAGGGTGGCCCGGG
GCCTCTCCATCTGCACCAGCAGTTTCCTCACTGTTGTCCAGGCTGTCATCATCAGTCCCAGAGCATCTGG
GTGGAACAGACTCAGGCCAGAGTCTGCATGGCACATCCTTCCATTCTTCTCATCCTTTTGGATACTCAAT
GCTTTAATCAGTATAAACCTAATTCATTCCATTAGAAGTACAAGTCTGAATATATCACAACAAATAAATT
ATGAGAATTCTTGCTATTTTACAGTAGAAAATCAGGAAATAAAATGGATTTTTCTCATCCTCATGGTCCT
GAGAGATGCATTGTTTCAGGTTGCCATGGGAGGGGCCAGTGGCTACATGGTATTTCTACTCCATAAGCAC
CACCATCATGTCCTCTACCTTCAGAACTCTAAGTTTCTCTACAGAACTCCCCCTGAGCTGAGAGCTGCTC
AAAGTGTCCTCCTTTTGATGCTGTGTTTTGTTTTCTTCTACTGGACAGATTGTGCCTTTTCTTTAATTAT
AAACATCTCTTCAAAGGACAACACCCTGATGATAAATACTCGAGAATTTCTGACCCTTTGTTATCCAACT
TTTAGCCCCTTTGTGCTGATTCACAGGGACGGGCTTCTGAGTAAATTTTGGCATGCTCATTGGGAGAAAT
TGAGTAAATGTCTCTGA

Translation (308 aa):
MVLKYINKVNKISLFMTVVGTLGNMFVSVNYTFSYWGSSEKKPIYLILIHLAFTNILILLTKGLPKTILA
FGLRNFLDDIGCKIIVYLERVARGLSICTSSFLTVVQAVIISPRASGWNRLRPESAWHILPFFSSFWILN
ALISINLIHSIRSTSLNISQQINYENSCYFTVENQEIKWIFLILMVLRDALFQVAMGGASGYMVFLLHKH
HHHVLYLQNSKFLYRTPPELRAAQSVLLLMLCFVFFYWTDCAFSLIINISSKDNTLMINTREFLTLCYPT
FSPFVLIHRDGLLSKFWHAHWEKLSKCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH