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Report for CCDS20830.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20830.1 Public Mus musculus 7 Vmn1r89 23 108 98 CCDS HistoryNCBI Gene:171260Re-query CCDS DB by CCDS ID:20830.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20830.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053008.4 ENSMUSP00000096413.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053008.4Link to Ensembl Protein Viewer:ENSMUSP00000096413.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000053008Re-query CCDS DB by Protein ID:ENSMUSP00000096413
Original member Current member EBI ENSMUST00000226717.1 ENSMUSP00000154060.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226717.1Link to Ensembl Protein Viewer:ENSMUSP00000154060.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226717Re-query CCDS DB by Protein ID:ENSMUSP00000154060
Original member Current member EBI ENSMUST00000228587.1 ENSMUSP00000154359.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228587.1Link to Ensembl Protein Viewer:ENSMUSP00000154359.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228587Re-query CCDS DB by Protein ID:ENSMUSP00000154359
Original member Current member EBI ENSMUST00000227176.1 ENSMUSP00000154366.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227176.1Link to Ensembl Protein Viewer:ENSMUSP00000154366.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227176Re-query CCDS DB by Protein ID:ENSMUSP00000154366
Original member Current member EBI ENSMUST00000227239.1 ENSMUSP00000154425.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227239.1Link to Ensembl Protein Viewer:ENSMUSP00000154425.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227239Re-query CCDS DB by Protein ID:ENSMUSP00000154425
Original member Current member NCBI NM_134226.1 NP_598987.1 Accepted alive Link to Nucleotide Sequence:NM_134226.1Link to Protein Sequence:NP_598987.1Re-query CCDS DB by Nucleotide ID:NM_134226Re-query CCDS DB by Protein ID:NP_598987Link to BLAST:NP_598987.1

Chromosomal Locations for CCDS 20830.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 13219339 13220289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGTTTTCAAGTGACACATTCTTCCAGATCTTTCTCATATTCCAGTTTTGTCTTGGTGTGATAGGGAACT
CATCACTGTTAATGTTGTATGTATACACTTTCTTCTTCAAGCCTCATTTTAAAAAGTTGGTAGATTCAGT
TTTCATGCACCTGACAATAGTTAATATGTTGACAATCGCATTCACATTGATAAAAGATATCATGTTATCC
TTTGGAGTACCAAATTTTCTGGATGATATCGGTTGTAAGACAGTTTTGTTTTCATTCAGAGTCAGCCGGG
GTCTGTCCATCTGCACCACCTCTGTTCTAAGCACGTTCCAAGTCATCACCATCACTCCCAGTAACTCTAA
GTGGGCCTCCTGGCTCAAGCCTAGACTCTCTACATGGATTTTTTCTTCCTTACTTTGCTCCTGGCTTATT
AACCTAGTCATCTACGGGTATATGCTTGACATGGTAATAGCCAAAACCAATAAAACCCATGTTGGCAATG
GATATTCAGATGGTTACTGTCAAAACAAACACTTTGGGAACCACAATTCAGGGTCATTTTTTAGCCTTCT
CCTCACTCACGATCTCTTCTATGTGGCTGTCATGGTGTGGGCCAGTCTCTACATGGTGATTTTTCTCTAC
AGACACTACAAGAGATCCCAGCATCTCCACAGTAGAAGCCTTTCCTCCCAGTCATCTCCTGAGCGCAAAG
CCACTCATAACATCCTGTCTCTGGTGAGCTGCTTTGTGTTAATTTATTGCTTGAACAACTCCATCACCCT
TTATGGCTTTTATACAAAAGAAAAAATTCCAAGATTGGAGTCAATTAATGCAATTTTAACAACATGCTAC
CCAACTGTCTGTCCTTTTTTCCTCATGAAGAATAATAAAGTTATTTTGCAATTCACTTCTTCATTTTCGG
TACTGAGGATGACATGTCATCAAAGTTCACTGCATGGCTGA

Translation (316 aa):
MFSSDTFFQIFLIFQFCLGVIGNSSLLMLYVYTFFFKPHFKKLVDSVFMHLTIVNMLTIAFTLIKDIMLS
FGVPNFLDDIGCKTVLFSFRVSRGLSICTTSVLSTFQVITITPSNSKWASWLKPRLSTWIFSSLLCSWLI
NLVIYGYMLDMVIAKTNKTHVGNGYSDGYCQNKHFGNHNSGSFFSLLLTHDLFYVAVMVWASLYMVIFLY
RHYKRSQHLHSRSLSSQSSPERKATHNILSLVSCFVLIYCLNNSITLYGFYTKEKIPRLESINAILTTCY
PTVCPFFLMKNNKVILQFTSSFSVLRMTCHQSSLHG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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