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Report for CCDS26315.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26315.1 Public Mus musculus 13 Vmn1r197 23 108 98 CCDS HistoryNCBI Gene:171278Re-query CCDS DB by CCDS ID:26315.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26315.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091734.1 ENSMUSP00000089328.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091734.1Link to Ensembl Protein Viewer:ENSMUSP00000089328.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000091734Re-query CCDS DB by Protein ID:ENSMUSP00000089328
Original member Current member EBI ENSMUST00000226225.1 ENSMUSP00000153747.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226225.1Link to Ensembl Protein Viewer:ENSMUSP00000153747.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226225Re-query CCDS DB by Protein ID:ENSMUSP00000153747
Original member Current member EBI ENSMUST00000227017.1 ENSMUSP00000154632.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227017.1Link to Ensembl Protein Viewer:ENSMUSP00000154632.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227017Re-query CCDS DB by Protein ID:ENSMUSP00000154632
Original member Current member NCBI NM_134244.1 NP_599005.1 Accepted alive Link to Nucleotide Sequence:NM_134244.1Link to Protein Sequence:NP_599005.1Re-query CCDS DB by Nucleotide ID:NM_134244Re-query CCDS DB by Protein ID:NP_599005Link to BLAST:NP_599005.1

Chromosomal Locations for CCDS 26315.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 22327911 22328807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGGTTTTGGACCCTGTCAAGGGCACAGTCTTCCTCTGTCTCACTGGACTTGGCACCGTTGGGAACAGCT
TAGTTTTTGTGAGTTATATGCACATGTTCCAAAGCACTGAGCAGAAACCTATACATCTCATTCTTGCTCA
CTTGACACTTACAAATATCATAATGCTTCTTTCAAAAGGGATGCCGAAGACAATAGAAGCATTTAATTTT
GGAAACTACTTAAATGACACTAGTTGTAAAGCTGTTGTTTACTTGGCAAGAGTGTCCCGGGGCCTCTCCA
TCTGCACCAGTAGTCTCCTCACTGTGGTCCAGGCCATCACCATGAGTCCAAGACACTCAATGTGGCAGAG
GCTCAACCTAAAGACCCCACAGCACACTCTTTTCTCGCTGCTCTGCTTGTGGATACTCAATTCCTTGATC
AGCATGAACTTACCCTATTACATTAAAAATGTCAGTAGTCTGAACATAACACAGTTTAAGAAAAATGGCA
ATTATTGCTATTTTCTGCCTGAAAGCTGGATAACAAGATGGATTTTTCTCACCCTCATGGTGCTGAGAGA
TGCAGTGTTTCAGGGTGCCATGGGAGGGGCCAGTGGCTACATGGTATTTCTTCTCCACAAGCATCACCAG
CATGTCCTCTACCTTCAGAACTCCAAACTTCTCTACAGAACTCCCCCTGAGCTGAGAGCTGCTCAGAGTG
TCCTCCTTCTGATGCTCTGTTTTCTTTTCTTTTATTGGGCAGATTGTTTTATTTCTTTATTCTTTACTTT
CTCCATAGAGAATCATTCTACAGTACTATATGTTCCGGAGTTCCTAACCCTTGGTTATGCAGTTCTCAGC
CCCTTCATGCTGATTCATAGAGATGAACATGTGATTAAATGTTTTCATACTCAGTAA

Translation (298 aa):
MVLDPVKGTVFLCLTGLGTVGNSLVFVSYMHMFQSTEQKPIHLILAHLTLTNIIMLLSKGMPKTIEAFNF
GNYLNDTSCKAVVYLARVSRGLSICTSSLLTVVQAITMSPRHSMWQRLNLKTPQHTLFSLLCLWILNSLI
SMNLPYYIKNVSSLNITQFKKNGNYCYFLPESWITRWIFLTLMVLRDAVFQGAMGGASGYMVFLLHKHHQ
HVLYLQNSKLLYRTPPELRAAQSVLLLMLCFLFFYWADCFISLFFTFSIENHSTVLYVPEFLTLGYAVLS
PFMLIHRDEHVIKCFHTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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