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Report for CCDS28517.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28517.1 Public Mus musculus 17 Tpsb2 23 108 98 CCDS HistoryNCBI Gene:17229Re-query CCDS DB by CCDS ID:28517.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28517.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069616.7 ENSMUSP00000063499.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069616.7Link to Ensembl Protein Viewer:ENSMUSP00000063499.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000069616Re-query CCDS DB by Protein ID:ENSMUSP00000063499
Original member Current member EBI ENSMUST00000234477.1 ENSMUSP00000157286.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234477.1Link to Ensembl Protein Viewer:ENSMUSP00000157286.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234477Re-query CCDS DB by Protein ID:ENSMUSP00000157286
Original member Current member NCBI NM_010781.3 NP_034911.3 Accepted alive Link to Nucleotide Sequence:NM_010781.3Link to Protein Sequence:NP_034911.3Re-query CCDS DB by Nucleotide ID:NM_010781Re-query CCDS DB by Protein ID:NP_034911Link to BLAST:NP_034911.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034911.3 276 P21845-1 276 99.2754% 0 2

Chromosomal Locations for CCDS 28517.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 25366552 25366621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25366760 25366925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25367046 25367311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25367445 25367608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25367682 25367846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (831 nt):
ATGCTGAAGCGGCTGCTGCTGCTGCTGTGGGCACTGTCCCTCCTGGCTAGTCTGGTGTACTCGGCCCCTC
GCCCAGCCAATCAGCGAGTGGGCATCGTGGGAGGACATGAGGCTTCTGAGAGTAAGTGGCCCTGGCAGGT
GAGCCTGAGATTTAAATTAAACTACTGGATACATTTCTGCGGAGGTTCTCTCATCCATCCACAGTGGGTG
CTCACTGCGGCACACTGTGTGGGACCGCACATCAAAAGCCCACAGCTCTTCCGGGTGCAGCTTCGTGAGC
AGTATCTATACTATGGGGACCAGCTCCTCTCTTTGAACAGGATCGTGGTGCACCCCCACTATTACACGGC
CGAGGGTGGGGCAGACGTTGCCCTGCTGGAGCTTGAGGTCCCTGTGAATGTCTCTACCCATCTCCACCCC
ATATCCCTGCCCCCTGCCTCGGAGACCTTCCCCCCAGGGACATCGTGCTGGGTGACAGGCTGGGGCGACA
TTGATAATGACGAGCCTCTCCCACCTCCTTATCCTCTGAAGCAAGTGAAGGTTCCCATTGTGGAAAACAG
CCTGTGTGACCGGAAGTACCACACTGGCCTCTACACGGGAGATGATTTTCCCATTGTCCATGATGGCATG
CTGTGTGCTGGAAATACCAGGAGAGACTCCTGCCAGGGCGATTCAGGGGGGCCACTGGTCTGCAAAGTGA
AGGGTACCTGGCTGCAGGCAGGAGTGGTCAGCTGGGGTGAGGGCTGCGCACAGCCCAACAAGCCTGGCAT
CTACACCCGGGTGACATACTACTTAGACTGGATCCACCGCTATGTCCCTGAGCATTCCTGA

Translation (276 aa):
MLKRLLLLLWALSLLASLVYSAPRPANQRVGIVGGHEASESKWPWQVSLRFKLNYWIHFCGGSLIHPQWV
LTAAHCVGPHIKSPQLFRVQLREQYLYYGDQLLSLNRIVVHPHYYTAEGGADVALLELEVPVNVSTHLHP
ISLPPASETFPPGTSCWVTGWGDIDNDEPLPPPYPLKQVKVPIVENSLCDRKYHTGLYTGDDFPIVHDGM
LCAGNTRRDSCQGDSGGPLVCKVKGTWLQAGVVSWGEGCAQPNKPGIYTRVTYYLDWIHRYVPEHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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