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Report for CCDS18084.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18084.1 Public Mus musculus 4 Dnajb5 23 108 98 CCDS HistoryNCBI Gene:56323Re-query CCDS DB by CCDS ID:18084.1Re-query CCDS DB by GeneID:56323See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18084.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084662.11 ENSMUSP00000081712.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084662.11Link to Ensembl Protein Viewer:ENSMUSP00000081712.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000084662Re-query CCDS DB by Protein ID:ENSMUSP00000081712
Original member Current member EBI ENSMUST00000098112.8 ENSMUSP00000095716.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098112.8Link to Ensembl Protein Viewer:ENSMUSP00000095716.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000098112Re-query CCDS DB by Protein ID:ENSMUSP00000095716
Original member Current member EBI ENSMUST00000107973.2 ENSMUSP00000103607.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107973.2Link to Ensembl Protein Viewer:ENSMUSP00000103607.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107973Re-query CCDS DB by Protein ID:ENSMUSP00000103607
Original member Current member NCBI NM_001355440.1 NP_001342369.1 Accepted alive Link to Nucleotide Sequence:NM_001355440.1Link to Protein Sequence:NP_001342369.1Re-query CCDS DB by Nucleotide ID:NM_001355440Re-query CCDS DB by Protein ID:NP_001342369Link to BLAST:NP_001342369.1
Current member NCBI NM_001374167.1 NP_001361096.1 Accepted alive Link to Nucleotide Sequence:NM_001374167.1Link to Protein Sequence:NP_001361096.1Re-query CCDS DB by Nucleotide ID:NM_001374167Re-query CCDS DB by Protein ID:NP_001361096Link to BLAST:NP_001361096.1
Current member NCBI NM_001374168.1 NP_001361097.1 Accepted alive Link to Nucleotide Sequence:NM_001374168.1Link to Protein Sequence:NP_001361097.1Re-query CCDS DB by Nucleotide ID:NM_001374168Re-query CCDS DB by Protein ID:NP_001361097Link to BLAST:NP_001361097.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342369.1 348 O89114 348 100% 0 0
NP_001361096.1 348 O89114 348 100% 0 0
NP_001361097.1 348 O89114 348 100% 0 0

Chromosomal Locations for CCDS 18084.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 42953175 42953385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42956526 42957127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42957318 42957551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1047 nt):
ATGGGAAAAGATTATTACAAGATTCTTGGGATCCCGTCTGGGGCCAATGAGGATGAGATCAAGAAGGCCT
ATCGGAAGATGGCCTTGAAGTACCACCCAGACAAGAACAAAGAGCCCAACGCCGAGGAGAAGTTTAAGGA
GATTGCTGAGGCCTACGATGTGCTGAGTGACCCTAAGAAGCGGAGCCTGTACGACCAGTATGGTGAGGAA
GGCCTCAAGACCGGCGGTGGTTCCTCAGGTGGTTCCGGTGGCTCCTTTCACTACACCTTTCATGGGGACC
CTCATGCCACCTTTGCTTCCTTCTTTGGTGGCTCCAACCCCTTCGATATCTTCTTTGCCAGCAGCCGCTC
CACTCGGCCCTTCAGTGGCTTTGACCCTGATGACATGGATGTGGATGAAGATGAGGACCCATTTGGTGCC
TTTGGCCGCTTTGGCTTCAATGGGCTGAGTAGGGGTCCAAGGCGAGCCCCAGAGCCACTGTACCCCCGGC
GCAAGGTACAGGACCCCCCTGTGGTGCACGAGCTGCGGGTGTCCCTGGAGGAGATCTACCATGGCTCCAC
CAAGCGGATGAAGATCACAAGGCGGCGCCTTAACCCTGACGGGCGAACTGTGCGCACCGAGGACAAAATC
CTGCACATTGTCATCAAACGAGGCTGGAAAGAAGGTACCAAGATTACCTTCCCCAAAGAGGGCGACGCCA
CACCTGACAACATCCCAGCCGACATTGTCTTCGTGCTCAAAGACAAGCCTCATGCACACTTCCGCCGAGA
TGGCACCAACGTGCTCTACAGTGCCCTCATCAGCCTCAAGGAGGCGCTGTGTGGCTGCACCGTGAACATT
CCCACCATTGATGGCCGAGTGATCCCTTTACCCTGCAATGATGTTATCAAGCCAGGCACCGTGAAAAGAC
TCCGTGGGGAGGGACTTCCCTTCCCCAAGGTGCCCACTCAGCGGGGAGACCTCATTGTTGAGTTCAAAGT
TCGATTCCCAGACAGATTAACCCCACAGACACGGCAGATCCTTAAGCAGCACCTCCCCTGCTCCTAG

Translation (348 aa):
MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRSLYDQYGEE
GLKTGGGSSGGSGGSFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRPFSGFDPDDMDVDEDEDPFGA
FGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKI
LHIVIKRGWKEGTKITFPKEGDATPDNIPADIVFVLKDKPHAHFRRDGTNVLYSALISLKEALCGCTVNI
PTIDGRVIPLPCNDVIKPGTVKRLRGEGLPFPKVPTQRGDLIVEFKVRFPDRLTPQTRQILKQHLPCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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