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Report for CCDS89537.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89537.1 Public Mus musculus 2 Fsip1 23 108 98 CCDS HistoryNCBI Gene:71313Re-query CCDS DB by CCDS ID:89537.1Re-query CCDS DB by GeneID:71313See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89537.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000231133.1 ENSMUSP00000155242.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231133.1Link to Ensembl Protein Viewer:ENSMUSP00000155242.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231133Re-query CCDS DB by Protein ID:ENSMUSP00000155242
Current member NCBI NM_001374672.1 NP_001361601.1 Accepted alive Link to Nucleotide Sequence:NM_001374672.1Link to Protein Sequence:NP_001361601.1Re-query CCDS DB by Nucleotide ID:NM_001374672Re-query CCDS DB by Protein ID:NP_001361601Link to BLAST:NP_001361601.1

Chromosomal Locations for CCDS 89537.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 118130560 118130612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118136114 118136624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118222326 118222460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118232904 118233059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118236914 118237024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118240392 118240549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118241643 118241735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118248295 118248391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118249806 118249960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118251639 118251819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118253286 118253417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1782 nt):
ATGCCAATGGATATTATAAAGGGGAACCTAGACGGAATTTCAAAACCAGCCTCAAGTTCAAGATCACGTC
CT
GGGAGCCGAAGTTCAAATGGTTCTCTGGAGGTGCTCACACCAGAACCAGGGTCTGTCAAGATTGACAT
G
GTAAACAAGTTGAATTCTGGCCAAGAGGGCCACACATCAAACAGTGGTGTGGAAGAAAGAAGGAATAGT
AAT
GATGCTAAGTGGGCAGACGACTCCAAGACAAAACCAGCCAAGGAGAGCTCAGATGAAGACCCGGACA
TG
CCTCAACCTCAGGCGACCCCTGAGCATTCAGATGATCCCAAATTAGAAGAGACGAATGCTGTACTTCA
A
AATGCTATTCGTAAGATGCACAGACTCGACAAGCTATTGGCCAAAAAACAATGTAGAGAAAAGGAAGTT
AAA
AAGCAAGGTCTAGAAATGAGAGTTAAGCTGTGGGAAGAGCTCAAGTCTGCAAAAAACACTGAAGACT
TA
GAAAATGACGAGGAGTTGGGAAACACAAAAAAGTTTTTGTGCTTGACTTCAGAATCTGCAGGGAAAGC
A
GCTGCAGAGGCATTGCATTGTGAGTTTGAAGACGCCCTTTTCTCAGTGTTTCATACTCAGATTCCTCCA
GAA
ACTTACGAAAATCTCATGGAGAAAGATTTTACCTGTGATGTGGAGAAAAATGAACCATTGATCATAA
CA
GAAAAGCAACCATTTTCAAATACAGAAGCGATTGAGCCTAGGAGTGAAGACAGCCAGGGTTTCATTAG
G
CAGAACGCTGAACACAGCCAGGATTTTATTAAGCGAAACATTGAGTTGGCCAAGCATTCGAGAAGCCCA
GTG
GTCATGGTTGAAGGAGAGAAGAAAAGACTGGATGAGCTCCTGCAAGGCCTGGATGATGCAGACTCAG
GA
CTCTCCAGTGCCGAGGGCGATCAGTGCGGTTGGCTGGTTCCAGGAGAAGGCTATACCCTTGCAGCCAC
T
GAGTCTCAGCAGCTTGCTGAGATTGACATAAAGCTTCAGGAACTCTCTGTTGACTCTCCCACCATCTTC
AGC
CTTGAAAGTCAGAGCCATAAGGGTGATATGGAATGTGATGCCAATGAAGAAAGAAATACGGAACCAA
CT
CCCGGAGAGAAGATACTCCGGGACCGCAAAGAGCAAAGGGACCGGGAGTCTCGGCTGAGAGCCATCGA
T
GGCAAGCTGAAAGAGCTCAGTGAACAGCTAAACTCCCCAACACGTCTTTCTGAGGAACAGCTGAAGTGT
CTT
CTGGATGAGTGTGTCTCCAAACAGAAATGCATTGCTCTTGGTCTTTCTTCTGAAAGAGAAAACAAAG
AT
ACTGATACAGCACTTGGGTCCCCACAGCTTTGCCCATCCACCCTCTGTGACTTACCAGAAGAGGCCGG
A
GCCAAGGTCCAGGAAACCCAGCTAGACGATGCAAACAGGCTTGAGAGTGAGGGATGTGCATATCCCGCA
GAC
TCCTATCTTACCAAAGCCTTGACTGGACACTACAAACCCGAGGCTCTGCTCCTCGAAGTAGAGACCA
TG
AAACACCTCCAGTTCTCCAAGGAGGAGGCTTTTAATGATGCAGTAGACTATTTTATGTCAAAGACCAT
T
GGCATTGGGAGACTGAAAAAGCCCCCTTTCTTGGATGATCCCCTGGATGACGTCAGCGTGAACTCCTCC
TCA
GATGACCAAGAGTTGAAAACCAGCCTTGCAGAGAAATCAGTAGTAGATGATCAGGAGGCTGGGGATG
CT
GTGAAGGAAATAGGAGAACATGAAGCATGA


Translation (593 aa):
MPMDIIKGNLDGISKPASSSRSRPGSRSSNGSLEVLTPEPGSVKIDMVNKLNSGQEGHTSNSGVEERRNS
N
DAKWADDSKTKPAKESSDEDPDMPQPQATPEHS
DDPKLEETNAVLQNAIRKMHRLDKLLAKKQCREKEV
K
KQGLEMRVKLWEELK
SAKNTEDLENDEELGNTKKFLCLTSESAGKAAAEALHCEFEDALFSVFHTQIPP
E
TYENLMEK
DFTCDVEKNEPLIITEKQPFSNTEAIEPRSEDSQGFIRQNAEHSQDFIKRNIELAKHSRSP
V
VMVEGEKKRLDELLQGLDDADSGLSSAE
GDQCGWLVPGEGYTLAATESQQLAEIDIKLQELSVDSPTIF
S
LESQSHKGDM
ECDANEERNTEPTPGEKILRDRKEQRDRESRLRAIDGKLKELSEQLNSPTRLSEEQLKC
L
LDECVSKQKCIALGLSSERENKDTDTALGSPQLCPSTLCDLPEEAGAKVQETQLDDANRLESEGCAYPA
D
SYLTKALTGHYKPEALLLEVETMKHLQFSKEEAFNDAVDYFMSKTIGIGRLKKPPFLDDPLDDVSVNSS
S
DDQELKTSLAEKSVV
DDQEAGDAVKEIGEHEA



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser