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Report for CCDS88196.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88196.1 Public Mus musculus 11 Git1 23 108 98 CCDS HistoryNCBI Gene:216963Re-query CCDS DB by CCDS ID:88196.1Re-query CCDS DB by GeneID:216963See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88196.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100812.3 ENSMUSP00000098375.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100812.3Link to Ensembl Protein Viewer:ENSMUSP00000098375.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100812Re-query CCDS DB by Protein ID:ENSMUSP00000098375
Current member NCBI NM_001374758.1 NP_001361687.1 Accepted alive Link to Nucleotide Sequence:NM_001374758.1Link to Protein Sequence:NP_001361687.1Re-query CCDS DB by Nucleotide ID:NM_001374758Re-query CCDS DB by Protein ID:NP_001361687Link to BLAST:NP_001361687.1

Chromosomal Locations for CCDS 88196.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 77493583 77493634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77498965 77499098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77499517 77499629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77499739 77499844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77500348 77500565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77500647 77500741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77501072 77501114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77503018 77503066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77503356 77503428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77503921 77504018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77504372 77504483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77504599 77504732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77504868 77505251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77505323 77505376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77505504 77505590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77505680 77505753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77505880 77506062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77506179 77506242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77506396 77506608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2286 nt):
ATGTCCCGGAAGGGGCCGCGAGCGGAGGTGTGTGCGGACTGCAGCGCTCCGGACCCTGGCTGGGCATCTA
TCAGCAGAGGTGTGCTGGTTTGTGACGAGTGCTGCAGTGTGCACCGGAGCCTGGGACGACACATCTCCAT
TGTCAAGCACCTGCGCCACAGCGCCTGGCCTCCTACGCTGCTCCAGATGGTGCACACGCTTGCCAGCAAC
GGGGCCAACTCCATCTGGGAGCACTCCCTGCTGGACCCTGCGCAAGTGCAAAGTGGCCGGCGCAAAGCCA
ACCCCCAAGATAAAGTCCACCCCATCAAGTCAGAGTTCATCAGGGCAAAGTACCAGATGCTGGCGTTCGT
GCACAAGCTTCCCTGCCGTGATGATGATGGGGTCACCGCCAAAGACCTCAGCAAGCAACTGCACTCAAGT
GTGCGAACAGGCAACTTGGAAACATGTCTGCGCCTGCTTTCCTTGGGTGCCCAGGCCAACTTTTTTCACC
CAGAAAAGGGCACTACACCTCTACATGTGGCTGCCAAGGCAGGGCAGACACTGCAGGCTGAGCTGCTGGT
AGTGTATGGGGCTGACCCCGGGTCTCCTGATGTCAATGGCCGCACACCCATCGACTATGCCAGGCAGGCG
GGGCACCATGAACTGGCAGAAAGGCTAGTTGAGTGCCAGTATGAGCTCACTGACCGGTTGGCCTTCTATC
TCTGTGGACGAAAGCCTGATCACAAGAATGGGCATTACATCATCCCACAGATGGCTGACAGCTTGGATCT
GTCTGAATTGGCCAAAGCTGCCAAGAAGAAGCTGCAAGCGCTCAGCAACCGGCTTTTTGAGGAACTTGCC
ATGGATGTGTATGATGAGGTGGATCGGAGAGAAAATGATGCTGTGTGGCTAGCTACCCAAAATCATAGCA
CCCTGGTGACGGAGCGCAGTGCTGTGCCCTTCCTGCCAGTCAACCCTGAATACTCAGCCACTCGGAATCA
GGGACGACAGAAATTGGCCCGTTTCAATGCCCGAGAGTTTGCCACCTTGATCATCGACATTCTCAGTGAG
GCCAAACGGAGGCAGCAGGGCAAGAGTCTAAGCAGCCCCACAGACAACCTTGAGCTGTCTGCACGGAGCC
AGAGCGAGCTGGATGACCAGCACGACTACGACAGCGTGGCTTCCGACGAAGACACGGACCAGGAGCCCTT
GCCCAGTGCAGGCGCCACGCGGAACAACCGTGCCAGGAGCATGGACTCCTCAGATCTGTCAGATGGGGCA
GTGACACTGCAGGAGTACCTGGAGCTGAAGAAGGCTCTGGCTACCTCCGAGGCCAAGGTGCAACAGCTCA
TGAAGGTCAACAGCAGCCTGAGTGACGAGCTGCGGCGGCTGCAAAGGGAGATCCACAAATTGCAGGCAGA
GAACCTGCAGCTTCGGCAGCCACCCGGACCAGTGCCTCCACCCTCACTTCCCAGTGAACGGGCAGAACAC
ACCCTCATGGGGCCTGGTGGAAGCACCCACCGCAGGGACCGCCAGGCCTTCTCTATGTATGAGCCAGGCT
CTGCATTGAAGCCCTTTGGAGGTACACCTGGGGACGAGCTCGCCACCCGGCTCCAGCCTTTCCACAGCAC
GGAGCTCGAAGACGATGCCATCTACTCAGTGCATGTCCCTGCCGGCCTTTATCGGATCCGGAAGGGGGTG
TCTGCCTCTTCTGTGCCCTTCACTCCCTCCTCCCCACTGCTGTCGTGCTCCCAAGAAGGAAGTCGCCACG
CGAGCAAGCTCTCACGCCACGGCAGTGGTGCGGACAGTGACTATGAGAACACACAGAGTGGGGACCCTCT
GCTTGGGCTTGAAGGGAAGCGATTCCTAGAGCTGAGCAAGGAGGATGAGCTGCACCCTGAGCTGGAGAGC
TTAGATGGAGACCTCGACCCCGGGCTCCCCAGCACCGAAGACGTCATCCTAAAGACAGAGCAGGTCACCA
AGAACATTCAGGAACTATTGCGGGCAGCCCAGGAGTTCAAACATGACAGCTTTGTACCCTGTTCAGAAAA
GATACATTTGGCTGTGACTGAGATGGCTTCTCTCTTCCCAAAGAGGCCAGCCCTGGAGCCTGTGCGCAGT
TCACTGCGGCTGCTCAACGCCAGCGCCTACCGGCTTCAGAGCGAGTGCCGGAAGACAGTGCCTCCAGAGC
CGGGCGCCCCTGTGGACTTCCAGCTGCTGACTCAGCAGGTGATCCAGTGCGCCTATGACATCGCCAAGGC
TGCCAAGCAGCTGGTCACCATCACCACCCGAGAGAAGAAACAGTGA

Translation (761 aa):
MSRKGPRAEVCADCSAPDPGWASISRGVLVCDECCSVHRSLGRHISIVKHLRHSAWPPTLLQMVHTLASN
GANSIWEHSLLDPAQVQSGRRKANPQDKVHPIKSEFIRAKYQMLAFVHKLPCRDDDGVTAKDLSKQLHSS
VRTGNLETCLRLLSLGAQANFFHPEKGTTPLHVAAKAGQTLQAELLVVYGADPGSPDVNGRTPIDYARQA
GHHELAERLVECQYELTDRLAFYLCGRKPDHKNGHYIIPQMADSLDLSELAKAAKKKLQALSNRLFEELA
MDVYDEVDRRENDAVWLATQNHSTLVTERSAVPFLPVNPEYSATRNQGRQKLARFNAREFATLIIDILSE
AKRRQQGKSLSSPTDNLELSARSQSELDDQHDYDSVASDEDTDQEPLPSAGATRNNRARSMDSSDLSDGA
VTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRRLQREIHKLQAENLQLRQPPGPVPPPSLPSERAEH
TLMGPGGSTHRRDRQAFSMYEPGSALKPFGGTPGDELATRLQPFHSTELEDDAIYSVHVPAGLYRIRKGV
SASSVPFTPSSPLLSCSQEGSRHASKLSRHGSGADSDYENTQSGDPLLGLEGKRFLELSKEDELHPELES
LDGDLDPGLPSTEDVILKTEQVTKNIQELLRAAQEFKHDSFVPCSEKIHLAVTEMASLFPKRPALEPVRS
SLRLLNASAYRLQSECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVTITTREKKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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