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Report for CCDS46862.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46862.1 Public Homo sapiens 3 LMOD3 24 110 108 CCDS HistoryNCBI Gene:56203Re-query CCDS DB by CCDS ID:46862.1Re-query CCDS DB by GeneID:56203See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46862.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000420581.7 ENSP00000414670.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000420581.7Link to Ensembl Protein Viewer:ENSP00000414670.3Re-query CCDS DB by Nucleotide ID:ENST00000420581Re-query CCDS DB by Protein ID:ENSP00000414670
Original member Current member EBI ENST00000489031.5 ENSP00000417210.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000489031.5Link to Ensembl Protein Viewer:ENSP00000417210.1Re-query CCDS DB by Nucleotide ID:ENST00000489031Re-query CCDS DB by Protein ID:ENSP00000417210
Original member Current member EBI ENST00000475434.1 ENSP00000418645.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000475434.1Link to Ensembl Protein Viewer:ENSP00000418645.1Re-query CCDS DB by Nucleotide ID:ENST00000475434Re-query CCDS DB by Protein ID:ENSP00000418645
Original member Current member NCBI NM_001304418.3 NP_001291347.1 Accepted alive Link to Nucleotide Sequence:NM_001304418.3Link to Protein Sequence:NP_001291347.1Re-query CCDS DB by Nucleotide ID:NM_001304418Re-query CCDS DB by Protein ID:NP_001291347Link to BLAST:NP_001291347.1
Original member Current member NCBI NM_198271.5 NP_938012.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198271.5Link to Protein Sequence:NP_938012.2Re-query CCDS DB by Nucleotide ID:NM_198271Re-query CCDS DB by Protein ID:NP_938012Link to BLAST:NP_938012.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291347.1 560 Q0VAK6-1 560 100% 0 0
NP_938012.2 560 Q0VAK6-1 560 100% 0 0

Chromosomal Locations for CCDS 46862.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 69109095 69109121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69118699 69120060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69122093 69122386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1683 nt):
ATGTCAGAGCACAGCAGAAATTCAGATCAAGAAGAACTTCTCGATGAGGAGATTAATGAAGATGAAATCT
TGGCCAACTTGTCTGCTGAAGAACTGAAAGAACTGCAGTCGGAAATGGAAGTCATGGCCCCTGACCCCAG
CCTTCCCGTGGGAATGATTCAGAAAGATCAAACTGACAAGCCACCGACAGGAAACTTCAATCATAAATCT
CTTGTTGATTATATGTATTGGGAAAAGGCATCCAGGCGCATGCTGGAAGAGGAACGAGTTCCTGTCACCT
TTGTGAAATCCGAGGAAAAGACTCAAGAAGAGCATGAAGAAATAGAAAAACGTAATAAAAATATGGCCCA
GTATTTAAAAGAAAAGCTCAATAATGAAATAGTTGCAAATAAAAGAGAATCAAAGGGCAGCAGCAATATC
CAAGAAACAGATGAAGAAGATGAAGAAGAAGAAGATGATGATGATGACGACGAAGGAGAAGATGATGGTG
AAGAGAGTGAAGAAACGAACAGAGAAGAGGAAGGCAAAGCAAAGGAACAAATTAGAAATTGTGAGAACAA
CTGCCAGCAGGTAACTGACAAAGCATTCAAAGAACAGAGAGACAGACCAGAGGCCCAAGAACAAAGTGAG
AAAAAAATATCGAAATTAGATCCTAAGAAGTTAGCTCTAGACACCAGCTTTTTGAAGGTAAGTACAAGGC
CTTCAGGAAACCAGACAGACCTGGATGGGAGCTTGAGGAGAGTTAGGAAAAATGATCCTGACATGAAGGA
ACTCAACCTGAACAACATTGAAAACATCCCCAAAGAAATGTTACTGGACTTTGTCAATGCAATGAAGAAA
AACAAGCACATCAAAACATTCAGTTTAGCCAATGTGGGTGCAGATGAGAATGTAGCATTTGCCTTGGCTA
ACATGTTGCGTGAAAATAGAAGCATCACCACTCTCAACATCGAGTCCAATTTCATCACAGGTAAAGGGAT
TGTGGCCATCATGAGGTGTCTCCAGTTTAATGAGACGCTAACTGAGCTTCGGTTTCACAATCAGAGGCAC
ATGTTGGGTCACCATGCTGAAATGGAAATAGCCAGGCTTTTGAAGGCAAACAACACTCTCCTGAAGATGG
GCTACCATTTTGAGCTTCCGGGTCCCAGAATGGTGGTCACTAATCTGCTCACCAGGAATCAGGATAAACA
AAGGCAGAAACGACAGGAAGAGCAAAAACAGCAGCAACTCAAGGAACAGAAGAAGCTGATAGCCATGTTA
GAGAATGGGTTGGGGCTGCCCCCTGGGATGTGGGAGCTGTTGGGAGGACCCAAGCCAGATTCCAGAATGC
AGGAATTCTTCCAGCCACCGCCACCTCGGCCTCCCAACCCCCAAAATGTCCCCTTTAGTCAACGCAGTGA
AATGATGAAAAAGCCATCGCAGGCCCCGAAGTACAGGACAGACCCTGACTCCTTCCGGGTGGTGAAGCTG
AAGAGAATCCAGCGCAAATCTCGGATGCCGGAAGCCAGAGAACCACCCGAGAAAACCAACCTCAAAGATG
TCATCAAAACGCTCAAGCCAGTGCCGAGAAACAGGCCACCCCCATTGGTGGAAATCACTCCCAGAGATCA
GCTGCTAAACGACATTCGTCACAGCAGTGTCGCCTATCTTAAACCTGTGCAACTGCCAAAAGAACTGGCG
TAA

Translation (560 aa):
MSEHSRNSDQEELLDEEINEDEILANLSAEELKELQSEMEVMAPDPSLPVGMIQKDQTDKPPTGNFNHKS
LVDYMYWEKASRRMLEEERVPVTFVKSEEKTQEEHEEIEKRNKNMAQYLKEKLNNEIVANKRESKGSSNI
QETDEEDEEEEDDDDDDEGEDDGEESEETNREEEGKAKEQIRNCENNCQQVTDKAFKEQRDRPEAQEQSE
KKISKLDPKKLALDTSFLKVSTRPSGNQTDLDGSLRRVRKNDPDMKELNLNNIENIPKEMLLDFVNAMKK
NKHIKTFSLANVGADENVAFALANMLRENRSITTLNIESNFITGKGIVAIMRCLQFNETLTELRFHNQRH
MLGHHAEMEIARLLKANNTLLKMGYHFELPGPRMVVTNLLTRNQDKQRQKRQEEQKQQQLKEQKKLIAML
ENGLGLPPGMWELLGGPKPDSRMQEFFQPPPPRPPNPQNVPFSQRSEMMKKPSQAPKYRTDPDSFRVVKL
KRIQRKSRMPEAREPPEKTNLKDVIKTLKPVPRNRPPPLVEITPRDQLLNDIRHSSVAYLKPVQLPKELA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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