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Report for CCDS27113.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27113.1 Public Mus musculus 14 Nrl 23 108 98 CCDS HistoryNCBI Gene:18185Re-query CCDS DB by CCDS ID:27113.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27113.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062232.14 ENSMUSP00000054457.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062232.14Link to Ensembl Protein Viewer:ENSMUSP00000054457.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000062232Re-query CCDS DB by Protein ID:ENSMUSP00000054457
Original member Current member EBI ENSMUST00000111404.7 ENSMUSP00000107035.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111404.7Link to Ensembl Protein Viewer:ENSMUSP00000107035.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111404Re-query CCDS DB by Protein ID:ENSMUSP00000107035
Original member Current member EBI ENSMUST00000178694.2 ENSMUSP00000136445.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178694.2Link to Ensembl Protein Viewer:ENSMUSP00000136445.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178694Re-query CCDS DB by Protein ID:ENSMUSP00000136445
Original member NCBI NM_001136074.2 NP_001129546.1 Updated not alive Link to Nucleotide Sequence:NM_001136074.2Link to Protein Sequence:NP_001129546.1Re-query CCDS DB by Nucleotide ID:NM_001136074Re-query CCDS DB by Protein ID:NP_001129546
Current member NCBI NM_001136074.3 NP_001129546.1 Accepted alive Link to Nucleotide Sequence:NM_001136074.3Link to Protein Sequence:NP_001129546.1Re-query CCDS DB by Nucleotide ID:NM_001136074Re-query CCDS DB by Protein ID:NP_001129546Link to BLAST:NP_001129546.1
Original member NCBI NM_001271916.1 NP_001258845.1 Updated not alive Link to Nucleotide Sequence:NM_001271916.1Link to Protein Sequence:NP_001258845.1Re-query CCDS DB by Nucleotide ID:NM_001271916Re-query CCDS DB by Protein ID:NP_001258845
Current member NCBI NM_001271916.2 NP_001258845.1 Accepted alive Link to Nucleotide Sequence:NM_001271916.2Link to Protein Sequence:NP_001258845.1Re-query CCDS DB by Nucleotide ID:NM_001271916Re-query CCDS DB by Protein ID:NP_001258845Link to BLAST:NP_001258845.1
Original member NCBI NM_001271917.1 NP_001258846.1 Updated not alive Link to Nucleotide Sequence:NM_001271917.1Link to Protein Sequence:NP_001258846.1Re-query CCDS DB by Nucleotide ID:NM_001271917Re-query CCDS DB by Protein ID:NP_001258846
Current member NCBI NM_001271917.2 NP_001258846.1 Accepted alive Link to Nucleotide Sequence:NM_001271917.2Link to Protein Sequence:NP_001258846.1Re-query CCDS DB by Nucleotide ID:NM_001271917Re-query CCDS DB by Protein ID:NP_001258846Link to BLAST:NP_001258846.1
Original member NCBI NM_008736.3 NP_032762.1 Updated not alive Link to Nucleotide Sequence:NM_008736.3Link to Protein Sequence:NP_032762.1Re-query CCDS DB by Nucleotide ID:NM_008736Re-query CCDS DB by Protein ID:NP_032762
Current member NCBI NM_008736.4 NP_032762.1 Accepted alive Link to Nucleotide Sequence:NM_008736.4Link to Protein Sequence:NP_032762.1Re-query CCDS DB by Nucleotide ID:NM_008736Re-query CCDS DB by Protein ID:NP_032762Link to BLAST:NP_032762.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129546.1 237 P54846 237 100% 0 0
NP_001258845.1 237 P54846 237 100% 0 0
NP_001258846.1 237 P54846 237 100% 0 0
NP_032762.1 237 P54846 237 100% 0 0

Chromosomal Locations for CCDS 27113.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 55520555 55520887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55522088 55522468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGGCTTTCCCTCCCAGTCCCTTGGCTATGGAATATGTTAATGACTTTGATTTGATGAAGTTCGAAATAA
AGCGGGAGCCTTCTGAGGGCCGATCTGGAGTCCCCACAGCCTCGTTGGGCTCCACACCATACAGCTCGGT
GCCTCCTTCACCCACCTTCAGTGAGCCAGGCATGGTGGGTGGTGGCGAGGCCCCTAGGCCAGGCCTGGAG
GAGCTATATTGGCTGGCCACCCTGCAGCAGCAGCTGGGGTCGGATGAGGTTCTCGGGCTGAGTCCCGACG
AAGCTGTGGAGCTGCTGCAGAACCAGGGTCCTGTCTCTATGGAAGGGCCTCTTGGCTACTATTCAGGGAG
CCCGGGAGAGACAGGAGCCCAGCATGTCCAGCTGCCCGAGAGATTTTCGGACGCCGCGCTGGTCTCGATG
TCTGTGCGCGAGTTGAACCGGCAGCTGCGGGGCTGCGGGCGCGACGAGGCTCTGCGGCTGAAGCAGAGGC
GCCGCACGCTCAAGAACCGCGGCTACGCTCAGGCTTGTCGCTCCAAGCGGCTGCAACAGCGGCGCGGGCT
GGAGGCAGAGCGCGCTCGCCTGGCCGCCCAGCTGGATGCCCTGCGGGCCGAGGTGGCACGCCTGGCTCGC
GAGCGCGACCTCTATAAGGCCCGCTGTGACCGGCTGACCTCCGGCGGCCCTGGGTCCGACGACCACACAC
ACCTCTTCCTCTGA

Translation (237 aa):
MAFPPSPLAMEYVNDFDLMKFEIKREPSEGRSGVPTASLGSTPYSSVPPSPTFSEPGMVGGGEAPRPGLE
ELYWLATLQQQLGSDEVLGLSPDEAVELLQNQGPVSMEGPLGYYSGSPGETGAQHVQLPERFSDAALVSM
SVRELNRQLRGCGRDEALRLKQRRRTLKNRGYAQACRSKRLQQRRGLEAERARLAAQLDALRAEVARLAR
ERDLYKARCDRLTSGGPGSDDHTHLFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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