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Report for CCDS21923.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21923.1 Public Mus musculus 7 Oat 23 108 98 CCDS HistoryNCBI Gene:18242Re-query CCDS DB by CCDS ID:21923.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21923.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084500.7 ENSMUSP00000081544.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084500.7Link to Ensembl Protein Viewer:ENSMUSP00000081544.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000084500Re-query CCDS DB by Protein ID:ENSMUSP00000081544
Original member Current member NCBI NM_016978.2 NP_058674.1 Accepted alive Link to Nucleotide Sequence:NM_016978.2Link to Protein Sequence:NP_058674.1Re-query CCDS DB by Nucleotide ID:NM_016978Re-query CCDS DB by Protein ID:NP_058674Link to BLAST:NP_058674.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058674.1 439 P29758 439 100% 0 0

Chromosomal Locations for CCDS 21923.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 132558170 132558330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132559646 132559790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132560752 132560865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132561784 132561912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132562587 132562709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132564207 132564334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132566769 132566864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132567066 132567290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132569906 132570104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1320 nt):
ATGCTTTCTAAACTAGCAAGTCTGCAGACCATTGCTGCTCTGCGCCGAGGAGTCCACACCTCAGTCGCCT
CT
GCCACGTCTGTTGCCACAAAGAAGACAGAGCAAGGCCCACCATCCTCCGAGTACATTTTTGAACGGGA
A
TCTAAATATGGTGCACACAATTACCATCCTTTGCCTGTAGCCCTGGAGAGAGGAAAAGGCATTTATATG
TGG
GATGTGGAAGGCAGGCAGTACTTCGATTTCCTGAGTGCTTATGGTGCTGTCAGCCAAGGACACTGCC
AC
CCAAAGATCATAGATGCCATGAAGAGTCAGGTGGACAAGCTGACATTAACATCTCGGGCTTTCTATAA
C
AATGTCCTTGGTGAATACGAGGAGTACATCACCAAGCTTTTCAACTACAACAAAGTTCTCCCTATGAAT
ACA
GGAGTGGAGGCTGGAGAGACTGCATGTAAGCTCGCTCGTCGTTGGGGCTACACCGTGAAAGGCATCC
AG
AAATACAAAGCAAAGATTGTTTTTGCTGATGGGAACTTTTGGGGTCGAACACTATCTGCAATCTCCAG
T
TCCACAGATCCGACCAGTTATGATGGCTTTGGACCCTTCATGCCAGGCTTTGAAACCATCCCATATAAC
GAT
CTGCCCGCACTGGAGCGTGCTCTTCAGGATCCAAATGTTGCTGCCTTCATGGTGGAGCCCATCCAGG
GT
GAAGCAGGCGTTATCGTTCCGGATCCAGGATACCTGACAGGAGTTCGGGAACTCTGCACCAGGCACCA
G
GTCCTGTTTATTGCTGATGAAATACAGACAGGATTGGCCAGAACTGGTAGATGGCTGGCTGTGGATCAT
GAG
AATGTCAGACCTGATATGGTTCTTCTTGGGAAGGCCCTTTCTGGCGGTTTATACCCTGTGTCTGCAG
TG
CTGTGTGACGATGAGATAATGCTGACCATTAAACCAGGCGAGCACGGCTCCACATACGGCGGAAACCC
A
CTAGGCTGCCGAATTGCCATTGCGGCTCTTGAGGTTTTAGAAGAGGAGAATCTTGCTGAGAATGCAGAC
AAG
ATGGGCGCTATCCTGAGGAAGGAGCTCATGAAGCTGCCCTCTGACGTTGTGACCTCAGTGAGAGGGA
AA
GGGTTGCTAAATGCCATTGTCATCAGAGAAACCAAAGACTGTGATGCTTGGAAGGTGTGCCTGCGACT
T
CGAGATAACGGGCTTCTGGCCAAGCCAACCCACGGTGATATCATCAGGCTTGCCCCTCCCCTTGTGATC
AAG
GAGGATGAGATCCGGGAGTCCGTGGAGATCATCAACAAGACTATCTTGTCCTTCTGA


Translation (439 aa):
MLSKLASLQTIAALRRGVHTSVASATSVATKKTEQGPPSSEYIFERESKYGAHNYHPLPVALERGKGIYM
W
DVEGRQYFDFLSAYGAVSQGHCHPKIIDAMKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYNKVLPMN
T
GVEAGETACKLARRWGYTVKGIQKYKAKIVFADGNFWGRTLSAISSSTDPTSYDGFGPFMPGFETIPYN
D
LPALE
RALQDPNVAAFMVEPIQGEAGVIVPDPGYLTGVRELCTRHQVLFIADEIQTGLARTGRWLAVDH
E
NVRPDMVLLGKALSGGLYP
VSAVLCDDEIMLTIKPGEHGSTYGGNPLGCRIAIAALEVLEEENLAENAD
K
MGAILRKELMKLPSDVVTSVRGKGLLNAIVIRETK
DCDAWKVCLRLRDNGLLAKPTHGDIIRLAPPLVI
K
EDEIRESVEIINKTILSF




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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