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Report for CCDS30302.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30302.1 Public Mus musculus X Igbp1 23 108 98 CCDS HistoryNCBI Gene:18518Re-query CCDS DB by CCDS ID:30302.1See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 30302.1
A downstream start codon is annotated for this CCDS representation based on strong conservation in a variety of mammalian species. It should be noted that an alternative upstream start codon, which would result in a protein that is 19 aa longer at the N-terminus, also exists. However, the upstream start codon is mouse-specific and has a weak Kozak signal. It is possible that the upstream start codon is used in mouse at least some of the time, while leaky scanning by ribosomes may allow downstream start codon use more of the time. There is no experimental evidence indicating which start codon is preferentially used in vivo.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 30302.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033570.5 ENSMUSP00000033570.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033570.5Link to Ensembl Protein Viewer:ENSMUSP00000033570.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000033570Re-query CCDS DB by Protein ID:ENSMUSP00000033570
Original member Current member NCBI NM_008784.3 NP_032810.4 Accepted alive Link to Nucleotide Sequence:NM_008784.3Link to Protein Sequence:NP_032810.4Re-query CCDS DB by Nucleotide ID:NM_008784Re-query CCDS DB by Protein ID:NP_032810Link to BLAST:NP_032810.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032810.4 340 Q61249 340 100% 0 0

Chromosomal Locations for CCDS 30302.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 100494366 100494556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100494905 100495198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100502995 100503190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100505190 100505269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100505940 100506052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100515557 100515705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1023 nt):
ATGGCAGCGTCTGAAGACGAGTTACTGCTGCCGCGGCTTCCGGAGCTCTTTGAAACAAGCAAAAAACTTC
TGGAGGACGTGGAAGTAGCAACTGAACCCACCGGCTCCCGAACAATCCAGGATAAGGTGTCCAAAGGACT
AGAACTCCTTGAGAAGGCTGCTGGAATGTTATCGCAGCTTGATTTGTTCAGCCGAAATGAAGATCTGGAA
GAGATTGCTTCCACCGACCTGAAGTACCTGATGGTGCCAGCGTTGCAAGGAGCCCTCACCATGAAACAAG
TCAACCCCAGCAAGCGTCTAGATCATTTGCAGCGGGCTCGAGAACACTTCGTACATTTCTTAACTCAGTG
TCATTGCTATCATGTGGCAGAGTTTCAGCTACCCCAAACCAAGACTAACTCAGCTGAAAATAATACTGCT
AGCTCCTCCATGGCCTATCCAAATCTCGTTGCTATGGCATCTCAAAGACAGGCTAAAATAGAGAGATACA
AGCAGAAGAAGGAGGTGGAGCATAGGTTGTCTGCACTGAAATCTGCTGTGGAAAGTGGTCAAGCAGATGA
TGAGCGCGTTCGGGAATATCACCTCCTTCACCTTCGGAGGTGGATTGCTGTCAGCTTAGAAGAGCTTGAG
AGCATTGACCAGGAAATAAAGATCCTGAAAGAAAAAGACTCTCCAAGAGAGGAAACAGCTTGTCACTCAT
CTCTTCCAGAGAAGCCTCCAATGAAACCCTTCATCCTCACTCGGAACAAGGCACAAGCCAAAGTATTTGG
AACTGGTTATCCAAGCCTGGCAACTATGACGGTGAGTGACTGGTATGAACAACATCAAAAATACGGAGTA
TTACCCGACCGGGGAATAGCCAAGCCGGCATCAGCTGATTTCCAAAGAGCAGCTCAGCAGCAGGAAGATC
AAGAGCAAAAGGATGAGGAGAGTGAGGAGAAAGCCTTGCACAGGATGCGAGAGTGGGACGACTGGAAGGA
CACCCATCCCAGGGGCTACGGCAACCGACAGAACATGGGCTAG

Translation (340 aa):
MAASEDELLLPRLPELFETSKKLLEDVEVATEPTGSRTIQDKVSKGLELLEKAAGMLSQLDLFSRNEDLE
EIASTDLKYLMVPALQGALTMKQVNPSKRLDHLQRAREHFVHFLTQCHCYHVAEFQLPQTKTNSAENNTA
SSSMAYPNLVAMASQRQAKIERYKQKKEVEHRLSALKSAVESGQADDERVREYHLLHLRRWIAVSLEELE
SIDQEIKILKEKDSPREETACHSSLPEKPPMKPFILTRNKAQAKVFGTGYPSLATMTVSDWYEQHQKYGV
LPDRGIAKPASADFQRAAQQQEDQEQKDEESEEKALHRMREWDDWKDTHPRGYGNRQNMG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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