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Report for CCDS27656.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27656.1 Public Mus musculus 15 Pdgfb 23 108 98 CCDS HistoryNCBI Gene:18591Re-query CCDS DB by CCDS ID:27656.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27656.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000500.7 ENSMUSP00000000500.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000500.7Link to Ensembl Protein Viewer:ENSMUSP00000000500.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000000500Re-query CCDS DB by Protein ID:ENSMUSP00000000500
Original member NCBI NM_011057.4 NP_035187.2 Updated not alive Link to Nucleotide Sequence:NM_011057.4Link to Protein Sequence:NP_035187.2Re-query CCDS DB by Nucleotide ID:NM_011057Re-query CCDS DB by Protein ID:NP_035187
Current member NCBI NM_011057.5 NP_035187.2 Accepted alive Link to Nucleotide Sequence:NM_011057.5Link to Protein Sequence:NP_035187.2Re-query CCDS DB by Nucleotide ID:NM_011057Re-query CCDS DB by Protein ID:NP_035187Link to BLAST:NP_035187.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035187.2 241 P31240 241 99.5851% 0 1

Chromosomal Locations for CCDS 27656.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 79997580 79997704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80000329 80000473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80001682 80001887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80003325 80003414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80005469 80005565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 80013936 80013998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (726 nt):
ATGAATCGCTGCTGGGCGCTCTTCCTTCCTCTCTGCTGCTACCTGCGTCTGGTCAGCGCCGAGGGGGATC
CCATTCCTGAGGAACTGTATGAAATGCTGAGCGACCACTCCATCCGCTCCTTTGATGATCTTCAGCGCCT
GCTGCACAGAGACTCCGTAGATGAAGATGGGGCTGAGCTGGACTTGAACATGACCCGAGCACACTCCGGA
GTCGAGTTGGAAAGCTCATCTCGAGGGAGGAGGAGCCTAGGGTCCCTGGCAGCAGCAGAGCCTGCTGTAA
TCGCCGAGTGCAAGACGCGCACAGAGGTGTTCCAGATCTCTCGGAACCTCATCGATCGCACCAACGCCAA
CTTCCTGGTGTGGCCGCCCTGTGTGGAGGTGCAGCGCTGCTCCGGCTGCTGCAATAACCGCAATGTGCAA
TGCCGGGCCTCGCAGGTGCAGATGCGGCCGGTCCAGGTGAGAAAGATTGAGATTGTGCGAAAGAAGCCCA
TCTTCAAGAAGGCCACAGTGACCTTGGAGGACCACCTCGCCTGCAAGTGTGAGACAGTAGTGACCCCTCG
GCCTGTGACTAGAAGTCCTGGGACATCCAGGGAGCAGCGAGCCAAGACGCCTCAAGCTCGGGTGACCATT
CGGACGGTGAGAATCCGCCGGCCCCCCAAAGGCAAGCACCGAAAGTTTAAGCACACCCATGACAAGGCGG
CCCTGAAGGAGACCCTCGGAGCCTAG

Translation (241 aa):
MNRCWALFLPLCCYLRLVSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHRDSVDEDGAELDLNMTRAHSG
VELESSSRGRRSLGSLAAAEPAVIAECKTRTEVFQISRNLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQ
CRASQVQMRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCETVVTPRPVTRSPGTSREQRAKTPQARVTI
RTVRIRRPPKGKHRKFKHTHDKAALKETLGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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