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Report for CCDS19761.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19761.1 Public Mus musculus 5 Serpine1 23 108 98 CCDS HistoryNCBI Gene:18787Re-query CCDS DB by CCDS ID:19761.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19761.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041388.10 ENSMUSP00000039586.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041388.10Link to Ensembl Protein Viewer:ENSMUSP00000039586.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000041388Re-query CCDS DB by Protein ID:ENSMUSP00000039586
Original member Current member EBI ENSMUST00000077523.3 ENSMUSP00000076728.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077523.3Link to Ensembl Protein Viewer:ENSMUSP00000076728.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000077523Re-query CCDS DB by Protein ID:ENSMUSP00000076728
Original member Current member NCBI NM_008871.2 NP_032897.2 Accepted alive Link to Nucleotide Sequence:NM_008871.2Link to Protein Sequence:NP_032897.2Re-query CCDS DB by Nucleotide ID:NM_008871Re-query CCDS DB by Protein ID:NP_032897Link to BLAST:NP_032897.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032897.2 402 P22777 402 99.5025% 0 2

Chromosomal Locations for CCDS 19761.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137063174 137063211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137063481 137063564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137064347 137064433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137064861 137064961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137066827 137067025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137067726 137067920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137069313 137069546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137071033 137071303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1209 nt):
ATGCAGATGTCTTCAGCCCTTGCTTGCCTCATCCTGGGCCTGGTTCTGGTCTCTGGGAAAGGGTTCACTT
TACCCCTCCGAGAATCCCACACAGCCCATCAGGCCACCGACTTCGGAGTAAAAGTGTTTCAGCAGGTGGT
CCAGGCCTCCAAAGACCGGAATGTGGTCTTCTCTCCCTATGGCGTGTCCTCGGTGCTGGCTATGCTGCAG
ATGACCACAGCGGGGAAAACCCGGCGGCAGATCCAAGATGCTATGGGATTCAAAGTCAATGAGAAGGGCA
CAGCTCATGCCCTCCGCCAGCTCTCCAAGGAGCTCATGGGGCCGTGGAACAAGAATGAGATCAGTACTGC
GGATGCCATCTTTGTCCAGCGGGACCTAGAGCTGGTCCAGGGCTTCATGCCCCACTTCTTCAAGCTCTTC
CAGACTATGGTGAAACAGGTGGACTTCTCAGAAGTGGAAAGAGCCAGATTTATCATCAATGACTGGGTGG
AAAGGCATACCAAAGGTATGATCAGTGACTTACTGGCCAAGGGGGCTGTAGACGAGCTGACACGCCTGGT
GCTGGTGAATGCCCTCTACTTCAGTGGCCAATGGAAGACTCCTTTCTTAGAGGCCAGCACCCACCAGCGC
CTCTTCCACAAGTCTGATGGCAGCACCGTCTCTGTGCCCATGATGGCTCAGAGCAACAAGTTCAACTACA
CTGAGTTCACCACCCCCGATGGGCTCGAGTATGACGTTGTGGAACTGCCCTACCAGGGCGACACCCTCAG
CATGTTCATCGCTGCACCCTTTGAGAAAGATGTGCACCTCTCCGCCCTCACCAACATCTTGGATGCTGAA
CTCATCAGACAATGGAAGGGCAACATGACCAGGCTGCCCCGCCTCCTCATCCTGCCTAAGTTCTCTCTGG
AGACTGAAGTGGACCTCAGAGGGCCCCTGGAGAAGTTGGGCATGCCTGACATGTTTAGTGCAACCCTGGC
CGACTTCACAAGTCTTTCCGACCAAGAGCAGCTCTCTGTAGCACAGGCACTGCAAAAGGTCAGGATCGAG
GTAAACGAGAGCGGCACAGTGGCGTCTTCCTCCACAGCCTTTGTCATCTCAGCCCGCATGGCCCCCACGG
AGATGGTTATAGACCGATCCTTTCTCTTTGTGGTTCGGCACAACCCGACAGAGACAATCCTCTTCATGGG
CCAAGTGATGGAGCCTTGA

Translation (402 aa):
MQMSSALACLILGLVLVSGKGFTLPLRESHTAHQATDFGVKVFQQVVQASKDRNVVFSPYGVSSVLAMLQ
MTTAGKTRRQIQDAMGFKVNEKGTAHALRQLSKELMGPWNKNEISTADAIFVQRDLELVQGFMPHFFKLF
QTMVKQVDFSEVERARFIINDWVERHTKGMISDLLAKGAVDELTRLVLVNALYFSGQWKTPFLEASTHQR
LFHKSDGSTVSVPMMAQSNKFNYTEFTTPDGLEYDVVELPYQGDTLSMFIAAPFEKDVHLSALTNILDAE
LIRQWKGNMTRLPRLLILPKFSLETEVDLRGPLEKLGMPDMFSATLADFTSLSDQEQLSVAQALQKVRIE
VNESGTVASSSTAFVISARMAPTEMVIDRSFLFVVRHNPTETILFMGQVMEP


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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