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Report for CCDS40842.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40842.1 Public Mus musculus X Plp2 23 108 98 CCDS HistoryNCBI Gene:18824Re-query CCDS DB by CCDS ID:40842.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40842.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033486.5 ENSMUSP00000033486.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033486.5Link to Ensembl Protein Viewer:ENSMUSP00000033486.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000033486Re-query CCDS DB by Protein ID:ENSMUSP00000033486
Original member Current member NCBI NM_019755.5 NP_062729.1 Accepted alive Link to Nucleotide Sequence:NM_019755.5Link to Protein Sequence:NP_062729.1Re-query CCDS DB by Nucleotide ID:NM_019755Re-query CCDS DB by Protein ID:NP_062729Link to BLAST:NP_062729.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062729.1 152 Q9R1Q7 152 100% 0 0

Chromosomal Locations for CCDS 40842.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 7668487 7668506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7668927 7669017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7669415 7669510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7669603 7669758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7671143 7671238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (459 nt):
ATGGCGGATTCTGAGCGTCTCTCGGCCCCCGGCTGCTGGTTAGCCTGCACCAGCTTCTCGCGCACCAAAA
AGGGAATTCTCCTGTTTGCTGAGATTATACTGTGCCTGGTGATCTTGATTTGCTTCAGTGCATCTACAAC
ATCGGCCTACTCCTCCCTGTCGGTGATTGAGATGATCTGTGCTGCTGTCTTACTTGTCTTCTACACGTGT
GACCTGCACTCCAAGATATCATTCATCAACTGGCCTTGGACTGACTTCTTCAGATCCCTCATAGCAACCA
TCCTGTACCTGATCACCTCCATTGTTGTCCTTGTAGAAGGAAGAGGCAGCTCCAGAGTTGTCGCTGGGAT
ACTGGGCTTACTTGCTACGTTGCTCTTTGGCTACGATGCATACATCACCTTCCCTCTAAAGCAGCAAAGA
CATACAGCAGCTCCCACTGACCCCACTGATGGCCCGTGA

Translation (152 aa):
MADSERLSAPGCWLACTSFSRTKKGILLFAEIILCLVILICFSASTTSAYSSLSVIEMICAAVLLVFYTC
DLHSKISFINWPWTDFFRSLIATILYLITSIVVLVEGRGSSRVVAGILGLLATLLFGYDAYITFPLKQQR
HTAAPTDPTDGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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