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Report for CCDS33026.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
33026.2 |
Public |
Homo sapiens |
19 |
ZNF780A |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:284323](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:33026.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:284323](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 19 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 33026.1 |
The coding region has been updated to extend the N-terminus to one that is supported by available conservation data and transcripts. The upstream AUG at the start of the update has a strong Kozak sequence and shows moderate conservation while the downstream AUG has a weaker Kozak sequence. The N-terminal extension completes a truncated KRAB box domain. |
Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 33026.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000340963.9 |
ENSP00000341507.5 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000340963.9](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000341507.5](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000340963](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000341507](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000595687.6 |
ENSP00000472189.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000595687.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000472189.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000595687](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000472189](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000683561.1 |
ENSP00000506741.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000683561.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000506741.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000683561](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000506741](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001010880.3 |
NP_001010880.2 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001010880.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001010880.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001010880](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001010880](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001010880.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001142578.2 |
NP_001136050.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001142578.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001136050.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001142578](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001136050](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001136050.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 33026.2
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1926 nt): ATGGTCCATGGATCAGTGACATTCAGGGATGTGGCCATTGACTTCTCTCAGGAGGAGTGGGAGTGCCTGC AGCCTGATCAGAGGACCTTGTACAGGGATGTGATGTTGGAGAACTACAGCCACCTGATCTCACTGGGAAG TTCCATTTCTAAACCAGATGTAATTACGTTACTAGAGCAAGAGAAAGAGCCCTGGATGGTTGTAAGGAAA GAAACAAGCAGACGGTATCCAGATTTGGAGTTAAAATATGGACCTGAGAAAGTATCTCCAGAAAATGATA CCTCTGAAGTAAATTTACCCAAACAGGTTATAAAGCAAATAAGTACAACTCTTGGCATTGAGGCCTTTTA TTTTAGAAATGACTCAGAATATAGACAATTTGAGGGACTACAGGGATATCAAGAAGGAAATATCAATCAA AAGATGATCAGCTATGAAAAACTGCCTACTCATACTCCTCATGCTTCTCTTATTTGCAATACACATAAAC CGTATGAATGTAAGGAATGTGGGAAATACTTTAGTCGTAGTGCAAATCTTATTCAGCATCAGAGTATTCA TACTGGAGAGAAACCCTTTGAATGTAAGGAGTGTGGGAAAGCCTTTCGACTTCACATACAATTTACTCGA CATCAGAAATTTCATACTGGTGAGAAACCTTTTGAATGTAACGAATGTGGAAAGGCCTTTAGTCTTCTTA CCCTGCTTAATCGCCATAAGAACATTCACACAGGTGAGAAACTGTTTGAATGTAAGGAATGTGGGAAGTC CTTTAATCGTAGCTCAAACCTTGTTCAACATCAGAGTATTCATTCTGGTGTAAAACCATATGAATGTAAG GAGTGTGGGAAAGGCTTTAATCGTGGTGCACACCTTATTCAGCATCAGAAAATTCATTCCAATGAGAAAC CCTTTGTATGTAAGGAATGTGGGATGGCCTTTCGATATCATTACCAACTTATTGAACATTGCCAAATTCA TACTGGTGAGAAACCCTTTGAATGTAAAGAATGTGGAAAGGCGTTTACTCTTCTGACAAAGCTTGTTCGA CATCAGAAGATTCATACTGGTGAGAAACCCTTTGAATGCAGGGAATGTGGGAAGGCCTTTAGTCTTCTCA ACCAGCTTAATCGCCATAAGAACATTCACACAGGTGAAAAACCGTTTGAATGTAAGGAATGTGGGAAGTC CTTTAATCGTAGCTCAAACCTTGTTCAACATCAGAGTATTCATGCTGGTATAAAACCATATGAATGTAAG GAGTGTGGGAAAGGCTTTAATCGTGGTGCACACCTTATTCAGCATCAGAAAATTCATTCCAATGAGAAAC CTTTTGTATGTAGGGAATGTGAGATGGCCTTTAGATATCATTGCCAACTTATTGAACATTCTCGAATTCA TACTGGTGACAAGCCATTTGAATGTCAAGACTGTGGGAAGGCCTTCAATCGTGGCTCAAGCCTTGTTCAA CATCAGAGTATTCACACTGGTGAGAAGCCCTATGAATGTAAGGAGTGTGGGAAGGCTTTTAGACTTTACC TACAACTTTCCCAACATCAGAAAACTCACACAGGTGAAAAACCATTTGAATGTAAGGAATGTGGGAAATT CTTTCGTCGTGGTTCAAATCTTAATCAACATCGAAGTATTCATACTGGAAAGAAACCCTTTGAATGTAAG GAATGTGGGAAAGCCTTTCGACTTCATATGCACCTTATTCGACATCAGAAATTGCATACTGGTGAGAAAC CCTTTGAATGTAAGGAGTGTGGGAAAGCCTTTCGACTTCATATGCAACTTATTCGACATCAGAAATTGCA TACTGGTGAGAAACCCTTTGAATGTAAGGAATGTGGAAAGGTTTTTAGTCTTCCCACCCAGCTTAATCGC CATAAGAACATTCACACAGGTGAGAAGGCATCTTGA
Translation (641 aa): MVHGSVTFRDVAIDFSQEEWECLQPDQRTLYRDVMLENYSHLISLGSSISKPDVITLLEQEKEPWMVVRK ETSRRYPDLELKYGPEKVSPENDTSEVNLPKQVIKQISTTLGIEAFYFRNDSEYRQFEGLQGYQEGNINQ KMISYEKLPTHTPHASLICNTHKPYECKECGKYFSRSANLIQHQSIHTGEKPFECKECGKAFRLHIQFTR HQKFHTGEKPFECNECGKAFSLLTLLNRHKNIHTGEKLFECKECGKSFNRSSNLVQHQSIHSGVKPYECK ECGKGFNRGAHLIQHQKIHSNEKPFVCKECGMAFRYHYQLIEHCQIHTGEKPFECKECGKAFTLLTKLVR HQKIHTGEKPFECRECGKAFSLLNQLNRHKNIHTGEKPFECKECGKSFNRSSNLVQHQSIHAGIKPYECK ECGKGFNRGAHLIQHQKIHSNEKPFVCRECEMAFRYHCQLIEHSRIHTGDKPFECQDCGKAFNRGSSLVQ HQSIHTGEKPYECKECGKAFRLYLQLSQHQKTHTGEKPFECKECGKFFRRGSNLNQHRSIHTGKKPFECK ECGKAFRLHMHLIRHQKLHTGEKPFECKECGKAFRLHMQLIRHQKLHTGEKPFECKECGKVFSLPTQLNR HKNIHTGEKAS
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