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Report for CCDS56139.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56139.1 Public Homo sapiens 2 CD302 24 110 108 CCDS HistoryNCBI Gene:9936Re-query CCDS DB by CCDS ID:56139.1Re-query CCDS DB by GeneID:9936See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 56139.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000429078.6 ENSP00000394301.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000429078.6Link to Ensembl Protein Viewer:ENSP00000394301.2Re-query CCDS DB by Nucleotide ID:ENST00000429078Re-query CCDS DB by Protein ID:ENSP00000394301
Original member Current member NCBI NM_001198763.2 NP_001185692.1 Accepted alive Link to Nucleotide Sequence:NM_001198763.2Link to Protein Sequence:NP_001185692.1Re-query CCDS DB by Nucleotide ID:NM_001198763Re-query CCDS DB by Protein ID:NP_001185692Link to BLAST:NP_001185692.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185692.1 174 Q8IX05-2 174 100% 0 0

Chromosomal Locations for CCDS 56139.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 159771851 159772053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 159777938 159777964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 159780882 159780998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 159783359 159783469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 159798132 159798198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (525 nt):
ATGCTCCGGGCCGCGCTGCCCGCGCTCCTGCTGCCGTTGCTGGGCCTCGCCGCTGCTGCCGTCGCGGACT
GTCCTTCATCTACTTGGATTCAGTTCCAAGACAGTTGTTACATTTTTCTCCAAGAAGCCATCAAAGTAGA
AAGCATAGAGGATGTCAGAAATCAGTGTACTGACCATGGAGCGGACATGATAAGCATACATAATGAAGAA
GAAAATGCTTTTATACTGGATACTTTGAAAAAGCAATGGAAAGGCCCAGATGATATCCTACTAGGCATGT
TTTATGACACAGATGTCCCATACAAAAGGAAATATTTATCAGATAACCACATTTTAATATCAGCATTGGT
GATTGCTAGCACGGTAATTTTGACAGTTTTGGGAGCAATCATTTGGTTCCTGTACAAAAAACATTCTGAT
TCTCGTTTCACCACAGTTTTTTCAACCGCACCCCAATCACCTTATAATGAAGACTGTGTTTTGGTAGTTG
GAGAAGAAAATGAATATCCTGTTCAATTTGACTAA

Translation (174 aa):
MLRAALPALLLPLLGLAAAAVADCPSSTWIQFQDSCYIFLQEAIKVESIEDVRNQCTDHGADMISIHNEE
ENAFILDTLKKQWKGPDDILLGMFYDTDVPYKRKYLSDNHILISALVIASTVILTVLGAIIWFLYKKHSD
SRFTTVFSTAPQSPYNEDCVLVVGEENEYPVQFD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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