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Report for CCDS21210.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21210.1 Public Mus musculus 7 Pold1 23 108 98 CCDS HistoryNCBI Gene:18971Re-query CCDS DB by CCDS ID:21210.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21210.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049343.14 ENSMUSP00000039776.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049343.14Link to Ensembl Protein Viewer:ENSMUSP00000039776.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000049343Re-query CCDS DB by Protein ID:ENSMUSP00000039776
Original member Current member NCBI NM_011131.3 NP_035261.3 Accepted alive Link to Nucleotide Sequence:NM_011131.3Link to Protein Sequence:NP_035261.3Re-query CCDS DB by Nucleotide ID:NM_011131Re-query CCDS DB by Protein ID:NP_035261Link to BLAST:NP_035261.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035261.3 1105 P52431 1105 100% 0 0

Chromosomal Locations for CCDS 21210.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 44532789 44532894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44533204 44533301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44533373 44533425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44533684 44533797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44533885 44534017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44534385 44534487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44534564 44534716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44535017 44535192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44535699 44535836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44535931 44536026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44537608 44537755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44537992 44538105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44538327 44538443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44538604 44538692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44538773 44538964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44539054 44539164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44539362 44539502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44540525 44540629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44540844 44541010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44541275 44541404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44541490 44541571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44541654 44541822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44541899 44542024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44542104 44542250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44542765 44542878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44543241 44543436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3318 nt):
ATGGATTGTAAGCGGCGACAAGGACCAGGCCCTGGGGTGCCCCCAAAGCGGGCTCGAGGGCACCTCTGGG
ATGAGGACGAGCCTTCGCCGTCGCAGTTTGAGGCGAACCTGGCACTGCTGGAGGAAATAGAGGCTGAGAA
CCGGCTGCAGGAGGCAGAGGAGGAGCTGCAGCTGCCCCCAGAGGGCACCGTGGGTGGGCAGTTTTCCACT
GCAGACATTGACCCTCGGTGGCGGCGGCCCACCCTACGTGCCCTGGACCCCAGCACGGAGCCCCTCATCT
TCCAGCAGCTGGAGATTGACCACTATGTGGGCTCAGCACCACCCCTGCCAGAAGGGCCCCTGCCATCCCG
GAACTCAGTGCCCATACTGAGGGCCTTTGGGGTCACCGATGAAGGCTTCTCCGTCTGCTGCCACATACAG
GGCTTTGCCCCCTACTTCTACACCCCCGCGCCTCCTGGTTTTGGGGCCGAGCACCTGAGTGAGCTGCAGC
AGGAGCTGAACGCAGCCATCAGCCGGGACCAGCGCGGTGGGAAGGAGCTCTCAGGGCCGGCAGTGCTGGC
AATAGAGCTATGCTCCCGTGAGAGCATGTTTGGGTACCACGGTCATGGCCCTTCTCCATTTCTCCGCATC
ACCCTGGCACTACCCCGCCTTATGGCACCAGCCCGCCGCCTTCTGGAACAGGGTGTCCGAGTGCCAGGCC
TGGGCACCCCGAGCTTCGCACCCTACGAAGCCAACGTGGACTTTGAGATCCGGTTCATGGTGGATGCTGA
CATTGTGGGATGCAACTGGTTGGAGCTGCCAGCTGGAAAGTACGTTCGGAGGGCGGAGAAGAAGGCCACC
CTGTGTCAGCTGGAGGTGGACGTGCTGTGGTCAGATGTGATCAGTCACCCACCGGAGGGGCAGTGGCAGC
GCATTGCACCCCTGCGTGTGCTTAGCTTCGACATCGAGTGTGCTGGCCGAAAAGGCATCTTCCCTGAGCC
TGAGCGTGACCCCGTGATCCAGATCTGTTCTCTGGGGCTGCGCTGGGGGGAGCCGGAGCCATTCTTGCGT
CTGGCACTCACGCTGCGGCCCTGTGCCCCCATCCTGGGTGCCAAAGTGCAGAGCTATGAGCGGGAAGAAG
ACCTGCTCCAGGCCTGGGCCGACTTCATCCTTGCCATGGACCCTGACGTGATCACCGGCTACAACATTCA
GAACTTTGACCTCCCATACCTCATCTCTCGGGCACAGGCCCTAAAGGTGGACCGCTTCCCTTTCCTGGGC
CGCGTGACTGGTCTCCGCTCCAACATCCGTGACTCCTCCTTCCAATCAAGGCAGGTCGGCCGGCGGGACA
GTAAGGTGATCAGCATGGTGGGTCGCGTTCAGATGGATATGCTGCAGGTGCTGCTTCGGGAACACAAGCT
CCGCTCCTACACGCTCAACGCTGTGAGTTTCCACTTCCTGGGCGAGCAGAAGGAGGACGTTCAGCACAGC
ATCATCACCGACCTGCAGAATGGGAACGAACAGACGCGCCGCCGCCTGGCCGTGTACTGCCTGAAGGACG
CCTTTCTGCCACTCCGACTACTAGAGCGCCTTATGGTGCTGGTGAATAATGTGGAGATGGCGCGTGTCAC
GGGTGTACCCCTTGGGTACCTGCTCACCCGGGGCCAGCAGGTCAAGGTCGTGTCTCAGCTGCTGCGCCAG
GCCATGCGCCAGGGGCTGCTGATGCCTGTGGTGAAGACCGAGGGCAGTGAGGACTACACGGGAGCCACAG
TCATTGAGCCCCTCAAAGGGTACTATGACGTCCCCATTGCCACCCTGGACTTCTCCTCCTTGTACCCATC
CATCATGATGGCCCATAATCTGTGCTACACCACGCTGCTCCGACCTGGGGCTGCCCAGAAGCTGGGCCTT
AAACCAGATGAGTTCATCAAGACACCCACTGGGGATGAGTTTGTGAAGTCATCTGTACGGAAGGGCCTCC
TGCCCCAGATCCTGGAGAATCTGCTGAGTGCCCGCAAGAGGGCCAAGGCTGAGCTGGCTCAGGAGACGGA
CCCCCTGCGGCGACAGGTCTTGGACGGCCGGCAACTGGCACTAAAAGTGAGTGCCAACTCCGTATATGGC
TTCACTGGTGCCCAGGTGGGCAAGCTGCCATGTTTGGAGATCTCCCAGAGTGTCACTGGGTTCGGGCGGC
AGATGATTGAGAAAACCAAGCAGCTTGTGGAGTCCAAGTACACCGTGGAAAATGGCTACGATGCCAACGC
CAAGGTAGTCTACGGTGACACGGACTCTGTGATGTGCCGGTTTGGCGTCTCCTCTGTGGCTGAAGCAATG
TCTCTGGGGCGGGAGGCTGCAAACTGGGTATCCAGTCACTTCCCATCACCCATCCGGCTGGAGTTCGAGA
AGGTTTACTTCCCATACCTGCTCATCAGCAAGAAGCGCTATGCTGGCCTGCTCTTCTCCTCCCGCTCTGA
TGCCCATGACAAAATGGACTGCAAGGGCCTGGAGGCTGTGCGCAGGGACAACTGTCCCCTGGTGGCCAAC
CTCGTTACATCCTCTCTGCGCCGGATCCTCGTGGACCGGGACCCTGATGGGGCAGTAGCCCATGCCAAGG
ACGTCATCTCGGACCTGCTGTGCAACCGCATAGACATCTCCCAGCTGGTCATCACCAAAGAGTTGACCCG
CGCAGCAGCAGACTATGCTGGCAAGCAGGCTCACGTGGAGCTGGCTGAGAGGATGAGGAAGCGCGACCCC
GGCAGTGCGCCCAGCCTGGGTGACCGAGTCCCCTATGTGATCATTGGTGCTGCTAAGGGTGTGGCCGCCT
ACATGAAGTCGGAGGACCCCCTGTTTGTGCTGGAGCACAGCCTGCCCATCGACACTCAGTACTACCTGGA
GCAGCAGCTGGCCAAGCCGCTCTTGCGCATCTTTGAGCCCATCCTGGGTGAGGGCCGTGCAGAGTCTGTG
CTGCTGCGCGGTGACCACACACGATGCAAGACTGTGCTCACCAGCAAGGTGGGCGGCCTCTTGGCCTTCA
CCAAGCGCCGCAACTGTTGCATTGGCTGCCGCTCCGTAATCGACCATCAAGGAGCCGTGTGTAAGTTCTG
TCAGCCACGGGAGTCGGAGCTCTATCAGAAGGAGGTGTCACACCTGAATGCCTTGGAAGAACGGTTCTCT
CGCCTCTGGACACAGTGTCAACGCTGCCAGGGCAGCTTGCATGAGGACGTCATCTGTACCAGCCGTGACT
GTCCCATCTTCTACATGCGCAAGAAGGTGCGCAAGGACCTGGAAGACCAGGAACGGCTGCTGCAGCGCTT
TGGACCGCCCGGCCCTGAGGCCTGGTGA

Translation (1105 aa):
MDCKRRQGPGPGVPPKRARGHLWDEDEPSPSQFEANLALLEEIEAENRLQEAEEELQLPPEGTVGGQFST
ADIDPRWRRPTLRALDPSTEPLIFQQLEIDHYVGSAPPLPEGPLPSRNSVPILRAFGVTDEGFSVCCHIQ
GFAPYFYTPAPPGFGAEHLSELQQELNAAISRDQRGGKELSGPAVLAIELCSRESMFGYHGHGPSPFLRI
TLALPRLMAPARRLLEQGVRVPGLGTPSFAPYEANVDFEIRFMVDADIVGCNWLELPAGKYVRRAEKKAT
LCQLEVDVLWSDVISHPPEGQWQRIAPLRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLR
LALTLRPCAPILGAKVQSYEREEDLLQAWADFILAMDPDVITGYNIQNFDLPYLISRAQALKVDRFPFLG
RVTGLRSNIRDSSFQSRQVGRRDSKVISMVGRVQMDMLQVLLREHKLRSYTLNAVSFHFLGEQKEDVQHS
IITDLQNGNEQTRRRLAVYCLKDAFLPLRLLERLMVLVNNVEMARVTGVPLGYLLTRGQQVKVVSQLLRQ
AMRQGLLMPVVKTEGSEDYTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGL
KPDEFIKTPTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQETDPLRRQVLDGRQLALKVSANSVYG
FTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYDANAKVVYGDTDSVMCRFGVSSVAEAM
SLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSRSDAHDKMDCKGLEAVRRDNCPLVAN
LVTSSLRRILVDRDPDGAVAHAKDVISDLLCNRIDISQLVITKELTRAAADYAGKQAHVELAERMRKRDP
GSAPSLGDRVPYVIIGAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILGEGRAESV
LLRGDHTRCKTVLTSKVGGLLAFTKRRNCCIGCRSVIDHQGAVCKFCQPRESELYQKEVSHLNALEERFS
RLWTQCQRCQGSLHEDVICTSRDCPIFYMRKKVRKDLEDQERLLQRFGPPGPEAW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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