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Report for CCDS46231.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46231.1 Public Homo sapiens 2 EFR3B 24 110 108 CCDS HistoryNCBI Gene:22979Re-query CCDS DB by CCDS ID:46231.1Re-query CCDS DB by GeneID:22979See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46231.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000403714.8 ENSP00000384081.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000403714.8Link to Ensembl Protein Viewer:ENSP00000384081.3Re-query CCDS DB by Nucleotide ID:ENST00000403714Re-query CCDS DB by Protein ID:ENSP00000384081
Original member Current member NCBI NM_014971.2 NP_055786.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014971.2Link to Protein Sequence:NP_055786.1Re-query CCDS DB by Nucleotide ID:NM_014971Re-query CCDS DB by Protein ID:NP_055786Link to BLAST:NP_055786.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055786.1 817 Q9Y2G0-1 817 100% 0 0

Chromosomal Locations for CCDS 46231.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25042313 25042319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25091325 25091401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25093003 25093130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25103637 25103787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25121673 25121794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25128183 25128332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25129975 25130109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25130552 25130630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25131368 25131503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25131750 25131911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25132903 25133014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25133383 25133434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25135467 25135639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25136523 25136598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25137341 25137502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25139059 25139190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25141366 25141433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25143735 25143862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25144960 25145051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25149694 25149742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25151914 25152020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25153712 25153761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25154235 25154340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2454 nt):
ATGTACGGTGTGTGTGGCTGCTGTGGTGCCCTACGCCCCAGGTACAAAAGGCTGGTTGACAACATCTTCC
CTGAGGATCCCGAGGATGGTCTGGTGAAGACCAACATGGAGAAGCTGACCTTCTATGCCCTCTCAGCTCC
AGAAAAACTTGATCGTATTGGCGCCTACCTCTCTGAGAGGCTCATCCGTGACGTGGGTCGCCATCGATAT
GGGTACGTGTGCATTGCTATGGAGGCTTTGGACCAGCTGCTCATGGCCTGCCACTGCCAGAGCATCAACC
TCTTCGTGGAGAGCTTCCTCAAGATGGTGGCCAAGCTGCTGGAGTCAGAGAAACCCAACCTGCAGATCCT
CGGCACCAACTCGTTTGTGAAGTTTGCCAACATCGAGGAGGACACCCCGTCCTATCACCGGAGCTATGAC
TTCTTTGTGTCCCGATTCAGTGAAATGTGCCACTCGAGCCATGATGACTTAGAAATCAAGACCAAAATTC
GAATGTCAGGCATCAAAGGCCTGCAAGGGGTGGTGAGGAAGACGGTGAATGATGAACTGCAGGCCAATAT
CTGGGACCCACAGCACATGGATAAGATCGTTCCATCACTGCTTTTCAATCTACAGCATGTAGAGGAGGCA
GAGAGCCGGTCTCCCTCACCCCTCCAAGCACCTGAGAAGGAGAAAGAGAGCCCCGCGGAGCTGGCTGAGA
GGTGTCTTCGGGAGCTGCTGGGCCGGGCTGCCTTTGGCAACATCAAAAACGCCATCAAGCCTGTTCTCAT
CCATCTGGATAACCATTCTCTTTGGGAACCCAAGGTGTTTGCCATCCGTTGCTTTAAAATCATCATGTAC
TCAATTCAGCCGCAGCACTCACACCTGGTCATCCAGCAGCTCCTGGGCCACCTGGACGCCAACAGCCGCA
GCGCTGCGACGGTGCGCGCGGGCATCGTGGAAGTCTTGTCGGAAGCCGCGGTCATCGCTGCCACCGGCTC
TGTGGGGCCCACAGTACTGGAGATGTTCAACACGCTGCTGAGGCAGCTGCGGCTCAGCATCGACTACGCG
CTGACCGGGAGCTACGACGGGGCGGTCAGCCTCGGCACCAAGATCATCAAGGAGCACGAGGAGCGCATGT
TCCAGGAGGCCGTCATCAAGACCGTGGGCTCCTTTGCCAGCACGCTGCCCACCTACCAGCGCTCCGAGGT
GATCCTCTTCATCATGAGCAAGGTCCCGCGGCCATCCCTGCACCAGGCGGTGGACACAGGCAGGACGGGG
GAGAATAGGAACCGTCTGACCCAGATTATGCTGCTAAAATCCCTCCTGCAGGTATCCACAGGTTTCCAGT
GCAACAACATGATGTCAGCCCTGCCTAGCAACTTCCTGGACCGCCTTCTCTCCACCGCCCTCATGGAGGA
TGCAGAAATTCGACTCTTTGTTCTAGAGATTCTCATCAGTTTCATTGATCGTCATGGCAACCGCCACAAG
TTCTCTACCATCAGTACCCTCAGTGACATCTCTGTCCTGAAGCTGAAAGTGGACAAGTGCTCTCGACAGG
ACACCGTCTTCATGAAGAAGCACTCCCAGCAGCTCTACAGACACATCTACCTGAGCTGCAAGGAGGAAAC
AAACGTGCAGAAACACTACGAGGCGCTCTATGGCTTGCTGGCCCTCATCAGCATCGAGCTGGCTAACGAG
GAGGTGGTGGTGGACCTCATCCGTCTGGTGCTGGCTGTTCAGGACGTGGCCCAAGTCAATGAGGAGAACT
TGCCTGTCTACAACCGCTGTGCCCTCTATGCTCTGGGCGCAGCCTACCTGAACCTCATCAGTCAGCTCAC
AACAGTGCCTGCCTTCTGCCAGCACATCCATGAGGTGATAGAGACCAGGAAGAAAGAGGCTCCATACATG
CTCCCCGAGGATGTGTTTGTGGAGAGGCCCAGGCTGTCTCAGAATCTTGATGGGGTGGTCATTGAGCTCC
TCTTCCGCCAGAGCAAGATCAGTGAAGTCCTGGGAGGCAGTGGCTACAACTCGGACCGGCTCTGCCTGCC
CTACATTCCTCAGCTGACAGATGAGGATCGTTTATCCAAGAGGAGGAGCATTGGAGAGACCATCTCCCTG
CAGGTGGAGGTAGAATCGAGGAACAGTCCGGAGAAGGAGGAGCGAGTGCCTGCCGAGGAGATCACCTATG
AGACACTGAAGAAAGCCATTGTGGACAGCGTAGCAGTGGAGGAGCAGGAGCGTGAGCGGCGGCGGCAGGT
GGTGGAGAAGTTCCAGAAGGCACCCTTCGAGGAGATTGCTGCACACTGCGGGGCCCGGGCATCGCTGCTC
CAGAGCAAACTCAATCAGATCTTTGAAATCACCATCCGGCCCCCACCAAGCCCATCAGGAACCATCACTG
CAGCCTACGGTCAGCCGCAGAACCACTCCATCCCCGTCTATGAAATGAAGTTTCCCGATCTGTGTGTATA
CTGA

Translation (817 aa):
MYGVCGCCGALRPRYKRLVDNIFPEDPEDGLVKTNMEKLTFYALSAPEKLDRIGAYLSERLIRDVGRHRY
GYVCIAMEALDQLLMACHCQSINLFVESFLKMVAKLLESEKPNLQILGTNSFVKFANIEEDTPSYHRSYD
FFVSRFSEMCHSSHDDLEIKTKIRMSGIKGLQGVVRKTVNDELQANIWDPQHMDKIVPSLLFNLQHVEEA
ESRSPSPLQAPEKEKESPAELAERCLRELLGRAAFGNIKNAIKPVLIHLDNHSLWEPKVFAIRCFKIIMY
SIQPQHSHLVIQQLLGHLDANSRSAATVRAGIVEVLSEAAVIAATGSVGPTVLEMFNTLLRQLRLSIDYA
LTGSYDGAVSLGTKIIKEHEERMFQEAVIKTVGSFASTLPTYQRSEVILFIMSKVPRPSLHQAVDTGRTG
ENRNRLTQIMLLKSLLQVSTGFQCNNMMSALPSNFLDRLLSTALMEDAEIRLFVLEILISFIDRHGNRHK
FSTISTLSDISVLKLKVDKCSRQDTVFMKKHSQQLYRHIYLSCKEETNVQKHYEALYGLLALISIELANE
EVVVDLIRLVLAVQDVAQVNEENLPVYNRCALYALGAAYLNLISQLTTVPAFCQHIHEVIETRKKEAPYM
LPEDVFVERPRLSQNLDGVVIELLFRQSKISEVLGGSGYNSDRLCLPYIPQLTDEDRLSKRRSIGETISL
QVEVESRNSPEKEERVPAEEITYETLKKAIVDSVAVEEQERERRRQVVEKFQKAPFEEIAAHCGARASLL
QSKLNQIFEITIRPPPSPSGTITAAYGQPQNHSIPVYEMKFPDLCVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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