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Report for CCDS28263.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28263.1 Public Mus musculus 16 Pros1 23 108 98 CCDS HistoryNCBI Gene:19128Re-query CCDS DB by CCDS ID:28263.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28263.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023629.8 ENSMUSP00000023629.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023629.8Link to Ensembl Protein Viewer:ENSMUSP00000023629.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000023629Re-query CCDS DB by Protein ID:ENSMUSP00000023629
Original member Current member NCBI NM_011173.3 NP_035303.1 Accepted alive Link to Nucleotide Sequence:NM_011173.3Link to Protein Sequence:NP_035303.1Re-query CCDS DB by Nucleotide ID:NM_011173Re-query CCDS DB by Protein ID:NP_035303Link to BLAST:NP_035303.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035303.1 675 Q08761 675 100% 0 0

Chromosomal Locations for CCDS 28263.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 62854429 62854504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 62885401 62885558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 62888981 62889005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 62898876 62898962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 62900326 62900448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 62900553 62900684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 62903492 62903617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 62907662 62907783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 62909998 62910113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 62913798 62913987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 62918075 62918242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 62919513 62919681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 62924516 62924664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 62926328 62926553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 62928033 62928193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2028 nt):
ATGAGGGTCCTGAGCGCACGCTTTCGGGTGCTACTGGCCTGCCTCGCCCTGGTGATCCCTGTCTCAGAGA
CAAACTTCTTGTCCAAAGAGCGTGCTTCACAAGTCCTGGTGAGGAAGCGCCGTGCAAATACCTTGTTCGA
AGAAACTATGAAGGGCAACCTTGAACGAGAGTGCATTGAAGAACTCTGCAATAAGGAGGAAGCCAGGGAG
GTCTTTGAAAATAATCCCGAGACGGATTATTTTTATCCAAAATATTTAGGTTGTCTGGGGGCATTCCGTG
TTGGCTCATTCCATGCTGCGAGGCAGTCAGCTAATGCTTATCCTGACCTCAGAAGCTGTGTCAAAGCCAT
CTCAGACCAATGTGACCCTATACCATGCAATGAAGATGGGTATCTGGCCTGCCAAGATGGCCAAGCTGCT
TTTACTTGCTTCTGTAAGCCCGGCTGGCAAGGAGACAGGTGTCAGTATGATGTAAATGAATGTAAAGATC
CCTCAAATGTCAATGGAGGCTGCAGCCAGATTTGTGACAACACTCCTGGAAGTTACCACTGCTCCTGTAA
AAGAGGCTTTGCTATGCTCCCAAATAAGAAAGACTGCAAAGATTTGGATGAATGCGCTCTAAAGCCAAGT
GTCTGTGGCACAGCTGTGTGCAAGAACATTCCAGGAGACTTCGAATGTGAATGTCCCGACGGCTACCGAT
ATGATCCCTCATCAAAATCTTGTAAAGATGTTGATGAGTGCTCTGAGAACATGTGTGCTCAACTGTGTGT
CAATTTCCCTGGAGGCTACTCTTGTTACTGTGATGGGAAGAAAGGATTCAAACTTGCCCAAGATCAGAAG
AGTTGTGAGGGTATCCCAGTGTGCCTTTCCTTGGACCTTGACAAAAACTATGAATTATTATACTTGGCCG
AGCAGTTTGCAGGAGTTGTCTTATATCTGAAATTTCGATTGCCAGATATCACGAGGTTTTCAGCTGAATT
TGATTTTCGCACATATGATTCAGAGGGCATCATACTGTATGCAGAATCTCTCGACCACTCCAATTGGCTC
CTGATTGCGCTTCGTGATGGGAAGATTGAAGTTCAGTTTAAGAATGAGTTTTCGACCCAAATCACAACTG
GAGGCAATGTTATTAACAACGGTATATGGAATATGGTGTCTGTGGAAGAATTAGACGACAGTGTTAGCAT
TAAAATAGCTAAGGAGGCCGTGATGAATATTAATAAACTTGGCAGCCTTTTTAAGCCTACCGATGGATTT
CTGGACACCAAAATATACTTCGCAGGCTTACCTCGGAAGGTGGAAAGCGCACTCATTAAACCGATTAATC
CTCGTCTGGATGGATGTATACGAGGCTGGAATCTGATGAAACAAGGAGCTTTAGGTGCCAAGGAAATAAT
TGAAGGAAAACAAAATAAACACTGCTTCCTCAATGTGGAGAAGGGCTCCTACTACCCTGGTTCCGGAATT
GCTCAGTTCAGCATAGACTACAATAATGTAACTAATGCAGAGGGTTGGCAAATGAATGTGACCTTGAATA
TCCGCCCTTCCACTGGCACTGGAGTCATGCTGGCTTTGGTTTCTGGGGGCACAGTGCCCTTTGCCTTGTC
CTTGGTGGATTCTCGCTCTGGAACGTCTCAGGATATTGTGGTATTTGTTGAAAATTCAGTGGTGGCTCGA
TTGGAGGCGGTATCTCTGTGCTCGGATCAGCAATCCCAACTGAAATGCAATGTTAACAGAAATGGACTGG
AACTGTGGACCCCACTTAGAAAAGATGTCATTTACTCTAAAGATCTTCAAAGGCAACTCGCCGTCTTGGA
CAAAGCAATGAAAAGAACCGTGGCCACTTACCTGGGTGGCATCCCAGATATTTCCTTCAGTGCCACACCA
GTGAATGCCTTTTACAGTGGCTGCATGGAAGTGAACATCAATGGGGTGCAGTTGGACCTGGATGAAGCCA
TTTCTAAACATAAGGACATTAGAGCTCACTCGTGCCCGTCAGTGAGGAAGATCCAGAAGAATTTTTAG

Translation (675 aa):
MRVLSARFRVLLACLALVIPVSETNFLSKERASQVLVRKRRANTLFEETMKGNLERECIEELCNKEEARE
VFENNPETDYFYPKYLGCLGAFRVGSFHAARQSANAYPDLRSCVKAISDQCDPIPCNEDGYLACQDGQAA
FTCFCKPGWQGDRCQYDVNECKDPSNVNGGCSQICDNTPGSYHCSCKRGFAMLPNKKDCKDLDECALKPS
VCGTAVCKNIPGDFECECPDGYRYDPSSKSCKDVDECSENMCAQLCVNFPGGYSCYCDGKKGFKLAQDQK
SCEGIPVCLSLDLDKNYELLYLAEQFAGVVLYLKFRLPDITRFSAEFDFRTYDSEGIILYAESLDHSNWL
LIALRDGKIEVQFKNEFSTQITTGGNVINNGIWNMVSVEELDDSVSIKIAKEAVMNINKLGSLFKPTDGF
LDTKIYFAGLPRKVESALIKPINPRLDGCIRGWNLMKQGALGAKEIIEGKQNKHCFLNVEKGSYYPGSGI
AQFSIDYNNVTNAEGWQMNVTLNIRPSTGTGVMLALVSGGTVPFALSLVDSRSGTSQDIVVFVENSVVAR
LEAVSLCSDQQSQLKCNVNRNGLELWTPLRKDVIYSKDLQRQLAVLDKAMKRTVATYLGGIPDISFSATP
VNAFYSGCMEVNINGVQLDLDEAISKHKDIRAHSCPSVRKIQKNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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