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Report for CCDS37868.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37868.1 Public Mus musculus 18 Pstpip2 23 108 98 CCDS HistoryNCBI Gene:19201Re-query CCDS DB by CCDS ID:37868.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37868.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114741.3 ENSMUSP00000110389.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114741.3Link to Ensembl Protein Viewer:ENSMUSP00000110389.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114741Re-query CCDS DB by Protein ID:ENSMUSP00000110389
Original member Current member NCBI NM_013831.4 NP_038859.3 Accepted alive Link to Nucleotide Sequence:NM_013831.4Link to Protein Sequence:NP_038859.3Re-query CCDS DB by Nucleotide ID:NM_013831Re-query CCDS DB by Protein ID:NP_038859Link to BLAST:NP_038859.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038859.3 334 Q99M15 334 100% 0 0

Chromosomal Locations for CCDS 37868.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 77794718 77794750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77835125 77835225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77846379 77846456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77848104 77848138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77854798 77854904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77861847 77861909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77870347 77870445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77871568 77871613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77871769 77871848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77873361 77873459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77874273 77874369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77875838 77875919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77877595 77877629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77879356 77879405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGACGGGCTCGCTGTTCAAGGGGAACTTCTGGAGCACGGACATTCTCAGCACCATTGGCTACGACAGCA
TTATCCAGCACCTGAACAATGGCCGTAAGAACTGCAAGGAGTTTGAAGACTTTTTGAAAGAAAGAGCATC
AATTGAAGAGAAATATGGCAAAGACCTGCTGAACCTCTCCAGGAAGAAGCCGTGTGGACAGTCTGAGATC
AATACCTTGAAGAGAGCCCTTGAGGTCTTCAAGCAGCAAGTAGACAACGTGGCTCAATGTCACATTCAGC
TTGCGCAGACTCTAAGAGAAGAGGCCAGGAAGATGGAAGAATTCCGGGAAAAGCAGAAGCTGCAGCGGAA
AAAGACAGAAACAATAATGGATGCTGCCCACAAGCAAAGGAACGCACAGTTCAAGAAAGCCATGGATGCC
AAGAAGAATTATGAGCAAAAGTGCCGGGACAAGGATGAGGCAGAGCAAGCTGTCCACCGCAGCGCCAATG
TGGCCAACCAACGGCAACAAGAAAAGCTTTTTGTGAAACTGGCCACTTCAAAGACTGCAGTAGAGGATTC
AGACAAAGCGTACATGTTGCACATCAACATGCTGGAGAAGGTTCGAGAAGACTGGCAGAGTGAACACATT
AAGGCCTGCGAGGTGTTCGAGGCTCAGGAATGTGAACGAATCAACTTCTTCCGGAATGCACTGTGGTTGC
ATCTGAATCAGCTGTCACAACAATGTGTCGCAAATGACGAGATGTATGAGCAAGTCCGTAAGAGTTTAGA
AACATGCAGCATTGAGAAGGACATCCAGTATTTTGTGAACCAGCGGAAAACTGGACAGACTCCCCCAGCA
CCCATCATGTATGAGAACTTCTACTCTCCTCAGCGGAATGCTGCCCCACCAGGAAAGACTACAGGGCCCA
ATCCAGCAAGGAGAGGACCTCTCCCTGTCCCTAAGCGGATACCAGATGATCCTGATTACTCTGTGGTTGA
AGATTACAGTTTGCTCTATCAGTGA

Translation (334 aa):
MTGSLFKGNFWSTDILSTIGYDSIIQHLNNGRKNCKEFEDFLKERASIEEKYGKDLLNLSRKKPCGQSEI
NTLKRALEVFKQQVDNVAQCHIQLAQTLREEARKMEEFREKQKLQRKKTETIMDAAHKQRNAQFKKAMDA
KKNYEQKCRDKDEAEQAVHRSANVANQRQQEKLFVKLATSKTAVEDSDKAYMLHINMLEKVREDWQSEHI
KACEVFEAQECERINFFRNALWLHLNQLSQQCVANDEMYEQVRKSLETCSIEKDIQYFVNQRKTGQTPPA
PIMYENFYSPQRNAAPPGKTTGPNPARRGPLPVPKRIPDDPDYSVVEDYSLLYQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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