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Report for CCDS29422.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29422.1 Public Mus musculus 19 Rad9a 23 108 98 CCDS HistoryNCBI Gene:19367Re-query CCDS DB by CCDS ID:29422.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29422.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025740.7 ENSMUSP00000025740.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025740.7Link to Ensembl Protein Viewer:ENSMUSP00000025740.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025740Re-query CCDS DB by Protein ID:ENSMUSP00000025740
Original member Current member NCBI NM_011237.2 NP_035367.1 Accepted alive Link to Nucleotide Sequence:NM_011237.2Link to Protein Sequence:NP_035367.1Re-query CCDS DB by Nucleotide ID:NM_011237Re-query CCDS DB by Protein ID:NP_035367Link to BLAST:NP_035367.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035367.1 389 Q9Z0F6 389 100% 0 0

Chromosomal Locations for CCDS 29422.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4195987 4196082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4196181 4196382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4197113 4197250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4197339 4197403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4197477 4197586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4197671 4197780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4200272 4200371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4200465 4200579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4200929 4201057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4201329 4201399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4201483 4201516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1170 nt):
ATGAAGTGCCTGATCACCGGGGGCAACGTGAAGGTGCTGGGCAAGGCTGTCCATTCGCTATCCCGAATCG
GGGACGAGCTCTATCTGGAACCCTTGAAGGACGGGCTCTCCCTACGGACTGTGAACTCGTCCCGTTCTGC
CTATGCCTGCTTCCTTTTTGCCCCACTCTTCTTCCAGCAGTACCAGGCGGCTTCCCCTGGTCAGGACCTG
CTGCGCTGTAAGATCCTGATGAAGGCCTTCCTGTCCGTCTTCCGCTCTCTGGCAATTGTGGAGAAGTCTG
TGGAGAAGTGCTGTATCTCCCTCAGTGGCAGCCACAGCCACCTGGTGGTCCAGCTCCACTGCAAGTATGG
GGTCAAGAAGACACACAACCTCTCCTTCCAGGACTGTGAGTCCCTGCAGGCTGTCTTCGACCCAGCCTCA
TGCCCTCACTTATTGCGCACCCCAGCACGGGTTCTGGCAGAGGCTGTTCTGTCCTTTCCCCTTGCATTGA
CTGAGGTGACACTGGGCATTGGCCGTGGCCGGCGGGTCATCCTGCGCAGCTACCAGGAAGAGGAGGCAGA
CAGCACCAGCAAAGCCATGGTGACTGAGACCAGCATTGGGGATGAGGACTTCCAGCAGCTGCATGCCCCA
GAAGGGATAGCTGTCACCTTCTGCCTCAAGGAATTTCGGGGGCTCCTGAGCTTTGCAGAGTCAGCGAATT
TGCCTCTTACTATCCACTTCGATGTTCCAGGCAGGCCAGTCATCTTTACTATTGAGGATTCCTTGCTGGA
TGCCCACTTTGTCTTGGCCACACTCTTAGAGCAAGACTCATGTTCCCAGGGCCCGTGTTCCCCAAAACCC
CACCAGCCAGTGCCTCAGAAGCAGGCACACAGCACACCCCACTTAGATGACTTTACCAGTGATGACATTG
ACTGTTACATGATTGCCATGGAAACCACTGGAGGCAATGAGGGCTCCGGGGCACAGCCTTCCACATCCCT
CCCACCTGTCTCCCTGGCCTCCCATGACCTTGCCCCCACCTCAGAGGAGGAAGCTGAGCCCAGTACAGTG
CCTGGGACTCCCCCACCCAAGAAGTTTCGTTCACTGTTCTTTGGCTCCATCCTGGCCCCTGTACACTCCC
CGCAGGGTCCCAACCCTGTGCTGGCTGAAGACAGTGATGGTGAAGGGTGA

Translation (389 aa):
MKCLITGGNVKVLGKAVHSLSRIGDELYLEPLKDGLSLRTVNSSRSAYACFLFAPLFFQQYQAASPGQDL
LRCKILMKAFLSVFRSLAIVEKSVEKCCISLSGSHSHLVVQLHCKYGVKKTHNLSFQDCESLQAVFDPAS
CPHLLRTPARVLAEAVLSFPLALTEVTLGIGRGRRVILRSYQEEEADSTSKAMVTETSIGDEDFQQLHAP
EGIAVTFCLKEFRGLLSFAESANLPLTIHFDVPGRPVIFTIEDSLLDAHFVLATLLEQDSCSQGPCSPKP
HQPVPQKQAHSTPHLDDFTSDDIDCYMIAMETTGGNEGSGAQPSTSLPPVSLASHDLAPTSEEEAEPSTV
PGTPPPKKFRSLFFGSILAPVHSPQGPNPVLAEDSDGEG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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