CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS49786.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
49786.2 |
Reviewed, update pending |
Mus musculus |
16 |
Gsc2 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:195333](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:49786.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 16 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 49786.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000012279.5 |
ENSMUSP00000012279.4 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000012279.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000012279.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000012279](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000012279](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_029469.2 |
NP_083745.2 |
Pending |
alive |
![Link to Nucleotide Sequence:NM_029469.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_083745.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_029469](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_083745](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_083745.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_083745.2 |
201 |
P56916 |
201 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 49786.2
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (606 nt): ATGGCGACTGCAGGCAGCGCGGCCAGCCGCAGGGACCCCGGGCGACCCTGCCCTTTCTCCATCGAGCACA TCCTCTCCAGCCTGCCGGAGCGCAGGCCCGCGACGCGGCCACCGCAGCCCGTCGGTGGTCGGAACCCCGC CGAGCTAGACGAACCCGAGGCGCCCGTCCCCGCTGCTCCTTGCGCCTGCTGCTGCTGCTGCAACCCGCGC GCTGCGACCCGCGGAACCCCGGAGACATCGTCCGGGCCGGGCTTGCGGCTGGCGTGGCCGCTGAGGTTGG CGCCCGCCACGCCCTCTCCCTTGACGGCGCCTAGAGCAGGCTCCCCGGCGCTGACTGGCACGAGCGGCCC CGGCCCGCAGAGGCGCACGCGGCGCCACCGTACCATCTTCAGCGAGGAGCAGCTGCAGGCGCTCGAGGCA CTCTTCGTACAGAACCAGTATCCCGACGTAGGCACACGCGAACGCTTGGCGGTCCGCATCCGCCTGCGAG AGGAGCGCGTGGAGGTCTGGTTCAAGAACCGCCGGGCAAAGTGGCGACACCAAAAGCGTGCTTCCTCATC GAGGCTCCTGCCTGGGACTAAGAAAACTCCCAAGGAGAGTTGTTGA
Translation (201 aa): MATAGSAASRRDPGRPCPFSIEHILSSLPERRPATRPPQPVGGRNPAELDEPEAPVPAAPCACCCCCNPR AATRGTPETSSGPGLRLAWPLRLAPATPSPLTAPRAGSPALTGTSGPGPQRRTRRHRTIFSEEQLQALEA LFVQNQYPDVGTRERLAVRIRLREERVEVWFKNRRAKWRHQKRASSSRLLPGTKKTPKESC
|