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Report for CCDS16974.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16974.1 Public Mus musculus 2 Rbl1 23 108 98 CCDS HistoryNCBI Gene:19650Re-query CCDS DB by CCDS ID:16974.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16974.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029170.7 ENSMUSP00000029170.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029170.7Link to Ensembl Protein Viewer:ENSMUSP00000029170.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029170Re-query CCDS DB by Protein ID:ENSMUSP00000029170
Original member Current member NCBI NM_011249.2 NP_035379.2 Accepted alive Link to Nucleotide Sequence:NM_011249.2Link to Protein Sequence:NP_035379.2Re-query CCDS DB by Nucleotide ID:NM_011249Re-query CCDS DB by Protein ID:NP_035379Link to BLAST:NP_035379.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035379.2 1063 Q64701-1 1063 100% 0 0

Chromosomal Locations for CCDS 16974.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 157147506 157147676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157150669 157150833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157152896 157153044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157159660 157159738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157161380 157161451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157163539 157163715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157167235 157167446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157169867 157170130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157174775 157174907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157175528 157175692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157177219 157177356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157187935 157188038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157188223 157188335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157191907 157192073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157193076 157193262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157194012 157194061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157195280 157195440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157195541 157195669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157195760 157195824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157196155 157196355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157199416 157199549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157204300 157204455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3192 nt):
ATGTTCGAGGACGAGCCCCACGCCGAGGGGGCGGCGGCGGTCGCCGCGGCCAGGGAGGCGCTGCAGGCCC
TGTGCCAGGAACTGAACCTGGACGAGGGAAGCGCGGCCGAAGCCCTGGATGACTTCACGGCCATCCGCGG
CAACTACAGCCTAGAGGGAGAAGTTATACACTGGCTGGCATGCTCTTTATATGTTGCTTGCCGCAAGAGC
ATCATTCCTACTGTGGGAAAGGGCGTCATGGAAGGAAACTGTGTCTCACTCACCAGAATACTGCGCTCAG
CTAAGTTAAGCTTAATACAGTTTTTTAGTAAAATGAAGAAATGGATGGACATGTCAAACCTACCACAAGA
GTTTCGTGAGCGGATAGAAAGGCTAGAAAGAAATTTTGAAGTATCTACTGTAATTTTTAAAAAATTTGAG
CCCATTTTTTTAGATATCTTTCAAAATCCATATGAAGAGCCACCAAAGTTGCCCCGGAGCCGAAAACAGA
GGAGGATCCCCTGCAGTGTTAAGGACCTCTTTAACTTCTGCTGGACACTCTTTGTTTACACCAAGGGGAA
TTTCCGTATGATTGGTGATGATTTAGTAAACTCCTATCATTTACTTCTGTGCTGCTTGGACCTGATCTTT
GCCAATGCTATAATGTGCCCAAATAGACGAGACTTGTTAAATCCATCATTTAAAGGCTTACCATCTGATT
TCCATGCTCCGGACTTCAAAGCCGCAGAAGAGCCTCCGTGCATCATTGCTGTACTTTGTGATCTGCATGA
CGGACTTCTAGTAGAAGCAAAAGGGATAAAGGAGCATTACTTTAAGCCATATATTTCAAAGCTCTTTGAT
AAGAAGATTTTAAAAGGTGAATGCCTCTTGGATCTTTCCAGCTTTACTGATAATAGCAAAGCCGTGAACA
AGGAATATGAAGAGTATGTCCTAACTGTTGGGGACTTCGATGAGAGGATCTTTTTGGGAGCAGATGCAGA
GGAGGAGATTGGAACACCTCGAAAGTTCACTGCTGACACCCCATTTGGGAAACTGACATCACAGGCCAGT
GTGGAATGCAACCTTCAACAACACTTTGAAAAAAAACGGTCATTTGCACCTTCTACCCCACTTACTGGAC
GGCGGTATTTACAAGAAAAAGAGGCAGTCACCACGCCTGTAGCTTCAGCCACTCAAAGTGTAAGCCGGTT
ACAGAGCATCGTCGCTGGATTAAAAAGCGCACCAAGTGAGCAGCTTCTGAATATTTTTGAATCTTGTATG
CGGAATCCTATGGGAAACATTATAAAAATTGTGAAAGGAATAGGAGAGACTTTCTGCCAACACTATACCC
AGTCCACAGATAAACAGCCAGGATCTCACATAGACTTTGCTGTAAACAGACTAAAACTGGCAGAAATTTT
GTATTACAAAATACTGGAGACTATAATGGTCCAGGAAACACGACGGCTTCATGGAATGGACATGTCGGTT
CTTTTAGAGCAAGATATATTTCATAAATCCTTGATGGCTTGTTGTTTGGAAATTGTGCTCTTTGCATATA
GCTCACCCCGTACTTTCCCGTGGATTATTGAAGTTCTCGATTTGCAGCCATTTTATTTTTATAAGGTTAT
TGAGGTGGTGATCCGCTCAGAGGAGGGCCTTTCCAGAGACATGGTGAAACATCTGAACAGCATTGAAGAA
CAGATTTTGGAGAGTTTGGCTTGGACTAATAATTCTGCACTGTGGGAGGCTCTGCATGCTTCTGCAAACA
GAGTCCCTTCCTGTGAAGAAGTTATATTCCCTAATAACTTTGAAATAGGTAATGGAGGAAATGTGCAAGG
CCATCTCCCCATGATGCCAATGTCTCCAATAATACATCCAAGAGTCAAGGAAGTTCGCACTGACAGTGGG
AGCCTTCGACAGGATATGCAACCATTGTCTCCGATTTCTGTCCATGAGCGCTACAGCTCCCCTGCTGCAG
GAAGTGCTAAGAGGAGACTGTTTGGAGATGACCCACCAAAGGACACACTGATGGATAAGATTATGGCAGA
AGGAACAAAGCTGAAAATTGCTCCTTCGAGTGTCACTGCTGAAAGCTTATCAATTTCCCCTGGGCAAGCT
CTTCTGACAATGGCCACAACCACAGTCACAGGGACGACGGGACGGAAAGTTACAGTCCCTTTGCATGGTA
TCGCCAATGATGCTGGAGAAATCACACTGGTTCCTATCTCCATGAATCCAACTCAGGAGTCCACAGCTGA
GAGCCCTGTGTCACTGACTGCCCAGTCACTAATTGGTACTTCTCCGAAACAGACCCATCTGACTAAAGCA
CAAGATGCTCATCTGACCGGAGTAAGCAAACCCAAGAGGACTGGGTCCTTAGCACTGTTCTATAGGAAGG
TCTATCATTTGGCAAGTGTGCGCCTACGTGACTTATGTCTAAAACTTGATGTTTCAAATGAATTACGAAG
GAAGATCTGGACATGTTTTGAATTCACTTTAGTTCACTGCCCTGATTTAATGAAAGATAGGCATTTGGAT
CAGCTCCTTCTGTGTGCATTTTACATCATGGCAAAAGTAACAAAAGAAGAAAGAACTTTTCAAGAAATAA
TGAAAAGTTATAGGAATCAGCCCCAAGCTAATAGTCACGTATACAGGAGTGTTCTCTTGAAGAGTATTCC
AGGAGGAGTCGTGGTGTACAATGGTGACTGTGAAATGACCGATGGTGACATAGAAGATGCCACAAAGACT
CCCAACTGTTCCAGTGAACCAGTGAAAGAGGAAAGAGGTGATCTTATCAAATTTTACAATACAGTATATG
TAGGAAGAGTGAAGTCATTTGCATTGAAGTATGATTTATCCAATCAGGACCATATAATGGATGCTCCCCC
GCTCTCTCCTTTCCCACACATTAAGCAGCAGCCGGGTTCCCCACGCCGCATCTCCCAGCAGCATTCCCTC
TATGTGTCTCCACACAAGAACGGAGCGGGCCTCACCCCCAGGAGCGCACTGCTGTACAAGTTCAACGGCA
GCCCTTCTAAGAGTTTGAAAGATATCAACAACATGATAAGGCAAGGCGAGCAGAAAACCAAGAAGCGCGT
GATAGCCATCAGTGGAGATGCAGACTCACCTGCCAAACGTCTCTGCCAAGAGAACGATGATGTTTTACTT
AAGCGACTACAAGATGTTGTCAGTGAGAGAGCAAATCATTAA

Translation (1063 aa):
MFEDEPHAEGAAAVAAAREALQALCQELNLDEGSAAEALDDFTAIRGNYSLEGEVIHWLACSLYVACRKS
IIPTVGKGVMEGNCVSLTRILRSAKLSLIQFFSKMKKWMDMSNLPQEFRERIERLERNFEVSTVIFKKFE
PIFLDIFQNPYEEPPKLPRSRKQRRIPCSVKDLFNFCWTLFVYTKGNFRMIGDDLVNSYHLLLCCLDLIF
ANAIMCPNRRDLLNPSFKGLPSDFHAPDFKAAEEPPCIIAVLCDLHDGLLVEAKGIKEHYFKPYISKLFD
KKILKGECLLDLSSFTDNSKAVNKEYEEYVLTVGDFDERIFLGADAEEEIGTPRKFTADTPFGKLTSQAS
VECNLQQHFEKKRSFAPSTPLTGRRYLQEKEAVTTPVASATQSVSRLQSIVAGLKSAPSEQLLNIFESCM
RNPMGNIIKIVKGIGETFCQHYTQSTDKQPGSHIDFAVNRLKLAEILYYKILETIMVQETRRLHGMDMSV
LLEQDIFHKSLMACCLEIVLFAYSSPRTFPWIIEVLDLQPFYFYKVIEVVIRSEEGLSRDMVKHLNSIEE
QILESLAWTNNSALWEALHASANRVPSCEEVIFPNNFEIGNGGNVQGHLPMMPMSPIIHPRVKEVRTDSG
SLRQDMQPLSPISVHERYSSPAAGSAKRRLFGDDPPKDTLMDKIMAEGTKLKIAPSSVTAESLSISPGQA
LLTMATTTVTGTTGRKVTVPLHGIANDAGEITLVPISMNPTQESTAESPVSLTAQSLIGTSPKQTHLTKA
QDAHLTGVSKPKRTGSLALFYRKVYHLASVRLRDLCLKLDVSNELRRKIWTCFEFTLVHCPDLMKDRHLD
QLLLCAFYIMAKVTKEERTFQEIMKSYRNQPQANSHVYRSVLLKSIPGGVVVYNGDCEMTDGDIEDATKT
PNCSSEPVKEERGDLIKFYNTVYVGRVKSFALKYDLSNQDHIMDAPPLSPFPHIKQQPGSPRRISQQHSL
YVSPHKNGAGLTPRSALLYKFNGSPSKSLKDINNMIRQGEQKTKKRVIAISGDADSPAKRLCQENDDVLL
KRLQDVVSERANH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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