NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37573.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37573.1 Public Mus musculus 17 Rps18 23 108 98 CCDS HistoryNCBI Gene:20084Re-query CCDS DB by CCDS ID:37573.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37573.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000008812.8 ENSMUSP00000008812.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000008812.8Link to Ensembl Protein Viewer:ENSMUSP00000008812.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000008812Re-query CCDS DB by Protein ID:ENSMUSP00000008812
Original member NCBI NM_011296.2 NP_035426.1 Updated not alive Link to Nucleotide Sequence:NM_011296.2Link to Protein Sequence:NP_035426.1Re-query CCDS DB by Nucleotide ID:NM_011296Re-query CCDS DB by Protein ID:NP_035426
Current member NCBI NM_011296.3 NP_035426.1 Accepted alive Link to Nucleotide Sequence:NM_011296.3Link to Protein Sequence:NP_035426.1Re-query CCDS DB by Nucleotide ID:NM_011296Re-query CCDS DB by Protein ID:NP_035426Link to BLAST:NP_035426.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035426.1 152 P62270 152 100% 0 0

Chromosomal Locations for CCDS 37573.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 33952043 33952118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33952221 33952312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33952403 33952591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33955078 33955176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33955618 33955620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (459 nt):
ATGTCTCTAGTGATCCCTGAGAAGTTCCAGCACATTTTGCGAGTACTCAACACCAACATCGATGGGCGGC
GGAAAATAGCCTTCGCCATCACTGCCATTAAGGGCGTGGGGCGGAGATATGCTCATGTGGTGTTGAGGAA
AGCAGACATCGACCTCACCAAGAGGGCTGGAGAACTCACGGAGGATGAGGTGGAGCGAGTGATCACCATC
ATGCAGAACCCACGACAGTACAAGATCCCAGACTGGTTCCTGAACAGACAGAAGGATGTGAAGGATGGGA
AGTACAGCCAGGTTCTGGCCAACGGTCTAGACAACAAGCTGCGTGAGGACCTGGAGAGGCTGAAGAAAAT
TCGAGCCCATAGAGGGCTGCGCCACTTTTGGGGCCTTCGTGTCCGCGGTCAGCACACCAAGACCACTGGC
CGCAGGGGCCGAACTGTGGGTGTATCCAAGAAGAAATGA

Translation (152 aa):
MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITI
MQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTG
RRGRTVGVSKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH