NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21243.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21243.1 Public Mus musculus 7 Ruvbl2 23 108 98 CCDS HistoryNCBI Gene:20174Re-query CCDS DB by CCDS ID:21243.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21243.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107771.11 ENSMUSP00000103400.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107771.11Link to Ensembl Protein Viewer:ENSMUSP00000103400.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000107771Re-query CCDS DB by Protein ID:ENSMUSP00000103400
Original member Current member EBI ENSMUST00000211214.1 ENSMUSP00000147502.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211214.1Link to Ensembl Protein Viewer:ENSMUSP00000147502.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211214Re-query CCDS DB by Protein ID:ENSMUSP00000147502
Original member NCBI NM_011304.3 NP_035434.1 Updated not alive Link to Nucleotide Sequence:NM_011304.3Link to Protein Sequence:NP_035434.1Re-query CCDS DB by Nucleotide ID:NM_011304Re-query CCDS DB by Protein ID:NP_035434
Current member NCBI NM_011304.4 NP_035434.1 Accepted alive Link to Nucleotide Sequence:NM_011304.4Link to Protein Sequence:NP_035434.1Re-query CCDS DB by Nucleotide ID:NM_011304Re-query CCDS DB by Protein ID:NP_035434Link to BLAST:NP_035434.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035434.1 463 Q9WTM5 463 100% 0 0

Chromosomal Locations for CCDS 21243.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45421980 45422005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45422092 45422206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45422385 45422514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45422688 45422807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45424079 45424197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45424283 45424377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45424682 45424805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45424951 45425044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45425144 45425250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45428479 45428545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45428653 45428782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45429454 45429595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45429909 45429964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45431320 45431374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45434252 45434263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1392 nt):
ATGGCAACCGTGGCAGCCACCACCAAAGTCCCTGAGATCCGAGATGTGACAAGAATCGAGCGAATCGGCG
CTCACTCCCACATCCGGGGGCTGGGACTGGATGATGCCCTGGAGCCAAGACAGGCTTCCCAGGGAATGGT
GGGGCAGCTAGCTGCCCGGCGTGCAGCTGGCGTGGTGCTGGAGATGATCCGAGAAGGGAAGATTGCAGGG
CGGGCCGTCCTCATTGCAGGCCAGCCAGGCACTGGGAAGACAGCCATTGCCATGGGCATGGCCCAGGCAC
TGGGCCCCGACACACCATTCACAGCCATCGCAGGCAGTGAGATCTTTTCTCTGGAGATGAGCAAGACTGA
GGCTCTAACGCAAGCCTTCCGCCGTTCCATTGGTGTCCGGATCAAGGAGGAGACAGAGATCATTGAAGGG
GAGGTGGTAGAGATCCAGATTGACCGGCCAGCCACAGGCACGGGATCCAAGGTGGGCAAACTGACCCTCA
AGACCACGGAGATGGAGACCATCTACGACCTGGGTACCAAGATGATCGAGTCCCTGACCAAGGACAAGGT
CCAGGCCGGAGACGTCATCACCATTGACAAGGCCACCGGCAAGATCTCCAAGCTGGGCCGCTCTTTCACA
CGTGCACGGGACTACGACGCCATGGGCTCCCAGACCAAGTTTGTGCAGTGCCCAGACGGAGAGCTGCAGA
AACGCAAGGAGGTGGTGCACACCGTGTCCCTCCATGAGATTGACGTCATCAACTCCCGTACTCAGGGCTT
CCTGGCCCTCTTCTCAGGAGACACAGGGGAGATCAAGTCAGAAGTCCGAGAACAGATCAATGCAAAGGTG
GCTGAGTGGAGAGAGGAGGGCAAGGCAGAGATCATTCCTGGGGTGCTGTTCATCGACGAGGTCCACATGC
TGGACATTGAGAGTTTCTCTTTCCTCAACCGGGCCCTGGAGAGCGACATGGCGCCTGTCCTCATCATGGC
CACCAACCGAGGGATCACCCGGATCCGAGGCACCAGCTACCAGAGTCCCCACGGCATCCCCATCGACCTG
CTGGACCGCTTGCTCATTGTATCAACGTCACCCTACAGTGAGAAGGATACCAAGCAGATTCTGCGCATCC
GCTGTGAGGAGGAAGATGTGGAGATGAGTGAGGACGCCTACACAGTGCTGACCCGCATTGGGCTCGAGAC
CTCCCTGCGCTATGCCATCCAGCTCATCACAGCGGCCAGCCTGGTGTGCCGGAAACGAAAGGGCACCGAG
GTGCAGGTCGATGACATTAAGCGTGTATACTCCCTCTTCCTGGATGAATCCCGCTCCACACAGTACATGA
AGGAGTACCAAGATGCCTTCCTCTTCAATGAGCTCAAAGGCGAAACAATGGACACCTCCTGA

Translation (463 aa):
MATVAATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAG
RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEG
EVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKISKLGRSFT
RARDYDAMGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKV
AEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDL
LDRLLIVSTSPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTE
VQVDDIKRVYSLFLDESRSTQYMKEYQDAFLFNELKGETMDTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH