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Report for CCDS39250.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39250.1 Under review, update Mus musculus 5 Atxn2 23 108 98 CCDS HistoryNCBI Gene:20239Re-query CCDS DB by CCDS ID:39250.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39250.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051950.13 ENSMUSP00000056715.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051950.13Link to Ensembl Protein Viewer:ENSMUSP00000056715.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000051950Re-query CCDS DB by Protein ID:ENSMUSP00000056715
Original member NCBI NM_009125.2 NP_033151.2 Updated not alive Link to Nucleotide Sequence:NM_009125.2Link to Protein Sequence:NP_033151.2Re-query CCDS DB by Nucleotide ID:NM_009125Re-query CCDS DB by Protein ID:NP_033151
Current member NCBI NM_009125.3 NP_033151.3 Pending alive Link to Nucleotide Sequence:NM_009125.3Link to Protein Sequence:NP_033151.3Re-query CCDS DB by Nucleotide ID:NM_009125Re-query CCDS DB by Protein ID:NP_033151Link to BLAST:NP_033151.3

Chromosomal Locations for CCDS 39250.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 121711636 121712276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121745723 121745759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121747410 121747469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121747925 121747996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121749079 121749229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121772667 121772788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121777370 121777461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121777908 121778105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121779418 121779596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121781333 121781542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121783857 121784039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121785215 121785412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121785759 121785866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121786334 121786404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121794938 121795248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121796373 121796436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121797223 121797375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121797725 121797791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121802081 121802265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121802948 121803080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121806222 121806275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121810851 121810996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121811385 121811612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121813385 121813553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121814338 121814366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3861 nt):
ATGCGTTCGTCCACCGCCGCCGCTCAGCGGCCCGCGGCGGGGGACCCCGAGCCGCGCCGCCCGGCGGGCT
GGGCCGCGCGGCGCTCGCTCCCGCGGACGGCGCGGCGCGGCGGGCGGGGCGGCGCGGTGGCGTATCCCTC
CGCCGGCCCTCCCCCGCGCGGCCCCGGCGCCCCTCCCCGCGGGCCGCGCTCGCCACCCTGCGCCTCAGAC
TGTTTTGGTAGCAACGGCCACGGCGCGTCCCGGCCCGGCTCCCGGCGGCTGCTCGGTGTCTGCGGGCCTC
CCCGCCCCTTCGTCGTTGTCCTGCTGCCTCTGGCCCCCGCGGCCACGCCGGCCCGCGCCTGCCCGCCCGG
CGTCCGCGCGTCCCCGCCGCGCTCCGGCGTCTCCTCCTCGGCGCGCCCGGCACCCGGCTGTCCCCGCCCG
GCGTGCGAGCCGGTGTATGGGCCGCTCACCATGTCGCTGAAGCCGCAGCCGCAGCCGCCCGCGCCCGCCA
CTGGCCGCAAGCCCGGCGGCGGCCTGCTCTCGTCGCCCGGCGCCGCGCCGGCCTCGGCCGCGGTGACCTC
GGCTTCCGTGGTGCCGGCCCCGGCCGCGCCGGTGGCGTCTTCCTCGGCGGCCGCGGGCGGCGGGCGTCCC
GGCCTGGGCAGAGGTCGGAACAGTAGCAAAGGACTGCCTCAGCCTACGATTTCTTTTGATGGAATCTATG
CAAACGTGAGGATGGTTCATATACTTACGTCAGTTGTTGGATCGAAATGTGAAGTACAAGTGAAAAACGG
AGGCATATATGAAGGAGTTTTTAAAACATACAGTCCTAAGTGTGACTTGGTACTTGATGCTGCACATGAG
AAAAGTACAGAATCCAGTTCGGGGCCAAAACGTGAAGAAATAATGGAGAGTGTTTTGTTCAAATGCTCAG
ACTTCGTTGTGGTACAGTTTAAAGATACAGACTCCAGTTATGCACGGAGAGATGCTTTTACTGACTCTGC
TCTCAGCGCAAAGGTGAATGGTGAGCACAAGGAGAAGGACCTGGAGCCCTGGGATGCAGGGGAGCTCACG
GCCAGCGAGGAGCTGGAGCTGGAGAATGATGTGTCTAATGGATGGGACCCCAATGACATGTTTCGATATA
ATGAAGAGAATTATGGTGTGGTGTCCACATATGATAGCAGTTTATCTTCATATACGGTTCCTTTAGAAAG
GGACAACTCAGAAGAATTTCTTAAACGGGAGGCAAGGGCAAACCAGTTAGCAGAAGAAATTGAATCCAGT
GCTCAGTACAAAGCTCGTGTCGCCCTTGAGAATGATGACCGGAGTGAGGAAGAAAAATACACAGCAGTCC
AGAGAAACTGCAGTGACCGGGAGGGGCATGGCCCCAACACTAGGGACAATAAATATATTCCTCCTGGACA
AAGAAACAGAGAAGTCCTATCCTGGGGAAGTGGGAGACAGAGCTCACCACGGATGGGCCAGCCTGGGCCA
GGCTCCATGCCGTCAAGAGCTGCTTCTCACACTTCAGATTTCAACCCGAACGCTGGCTCAGACCAAAGAG
TAGTTAATGGAGGTGTTCCCTGGCCATCGCCTTGCCCATCTCCTTCCTCTCGCCCACCTTCTCGCTACCA
GTCAGGTCCCAACTCTCTTCCACCTCGGGCAGCCACCCCTACACGGCCGCCCTCCAGGCCCCCCTCGAGG
CCCTCCAGACCCCCGTCTCACCCCTCTGCTCATGGTTCTCCAGCTCCTGTCTCTACTATGCCTAAACGCA
TGTCTTCAGAAGGACCCCCAAGGATGTCTCCAAAGGCACAGCGCCACCCTCGGAATCACAGAGTCTCTGC
TGGGAGAGGCTCCATGTCTAGTGGCCTAGAATTTGTATCCCACAATCCCCCAAGTGAAGCAGCTGCTCCT
CCAGTGGCAAGGACCAGTCCTGCAGGGGGAACGTGGTCCTCAGTGGTCAGTGGGGTTCCAAGGTTATCTC
CCAAAACTCACAGACCCAGGTCTCCCAGGCAGAGCAGCATTGGAAACTCTCCCAGCGGGCCTGTGCTTGC
TTCTCCCCAAGCTGGCATCATCCCTGCAGAAGCCGTTTCCATGCCTGTTCCCGCCGCATCTCCGACTCCT
GCCAGCCCTGCATCCAACAGAGCACTGACCCCATCTATTGAGGCAAAAGATTCCAGGCTTCAAGATCAGA
GGCAGAACTCTCCTGCAGGGAGTAAAGAAAATGTTAAAGCAAGTGAAACATCACCTAGCTTTTCAAAAGC
TGACAACAAAGGTATGTCACCAGTTGTTTCTGAACACAGAAAACAGATTGATGACTTAAAGAAGTTTAAG
AATGATTTTAGGTTACAGCCAAGCTCTACATCTGAATCTATGGATCAACTACTAAGCAAAAATAGAGAAG
GAGAAAAGTCACGAGATTTGATTAAAGATAAAACGGAAGCAAGTGCTAAGGATAGTTTCATTGACAGCAG
CAGCAGCAGCAGCAACTGTACCAGTGGCAGCAGCAAGACCAACAGCCCTAGCATCTCCCCTTCCATGCTT
AGTAATGCAGAGCACAAGAGGGGGCCTGAGGTCACATCCCAAGGGGTGCAGACTTCCAGCCCAGCCTGCA
AACAAGAGAAGGATGACAGAGAAGAGAAGAAAGACACAACAGAGCAGGTTAGGAAATCGACATTGAATCC
CAATGCAAAGGAGTTCAACCCTCGTTCTTTCTCTCAGCCAAAGCCTTCTACTACCCCAACGTCACCTCGG
CCTCAAGCACAACCCAGCCCATCTATGGTGGGTCATCAGCAGCCAGCTCCAGTGTACACTCAGCCTGTGT
GCTTCGCACCCAATATGATGTATCCCGTCCCAGTGAGCCCGGGCGTACAACCTTTATACCCAATACCTAT
GACGCCCATGCCTGTGAACCAAGCCAAGACATATAGAGCAGGTAAAGTACCAAATATGCCCCAACAGCGA
CAAGACCAACATCATCAAAGCACCATGATGCACCCAGCCTCCGCGGCAGGGCCACCCATCGTAGCCACCC
CGCCCGCTTACTCCACTCAGTACGTTGCCTACAGCCCTCAGCAGTTTCCCAATCAGCCTTTGGTCCAGCA
TGTGCCGCATTATCAGTCTCAGCATCCTCATGTGTACAGTCCTGTCATACAAGGTAATGCCAGGATGATG
GCACCACCAGCACATGCTCAGCCTGGTTTAGTGTCTTCTTCAGCTGCTCAGTTCGGGGCTCACGAGCAGA
CGCACGCCATGTATGCATGTCCCAAATTACCATACAACAAGGAGACAAGCCCTTCTTTCTACTTTGCCAT
TTCCACCGGCTCCCTCGCTCAGCAGTATGCACATCCTAATGCCGCCCTGCATCCACATACTCCCCATCCT
CAGCCTTCGGCCACTCCCACCGGACAGCAGCAAAGCCAGCATGGTGGAAGTCACCCTGCACCCAGTCCTG
TTCAGCACCATCAGCACCAGGCTGCCCAGGCTCTTCATCTGGCCAGTCCACAGCAGCAGTCGGCCATTTA
TCATGCGGGGCTGGCACCAACACCACCTTCCATGACACCTGCCTCTAATACACAGTCTCCACAGAGCAGT
TTCCCAGCAGCACAACAGACAGTCTTCACCATCCACCCTTCTCATGTTCAGCCGGCATACACCACCCCAC
CCCACATGGCCCACGTACCTCAGGCTCATGTACAGTCAGGAATGGTTCCTTCTCATCCAACTGCCCATGC
GCCAATGATGCTAATGACGACACAGCCACCCGGCGGTCCCCAGGCCGCCCTCGCTCAAAGTGCACTACAG
CCCATTCCAGTCTCGACAACAGCGCATTTCCCTTATATGACGCACCCTTCAGTACAAGCCCACCACCAAC
AGCAGTTGTAA

Translation (1286 aa):
MRSSTAAAQRPAAGDPEPRRPAGWAARRSLPRTARRGGRGGAVAYPSAGPPPRGPGAPPRGPRSPPCASD
CFGSNGHGASRPGSRRLLGVCGPPRPFVVVLLPLAPAATPARACPPGVRASPPRSGVSSSARPAPGCPRP
ACEPVYGPLTMSLKPQPQPPAPATGRKPGGGLLSSPGAAPASAAVTSASVVPAPAAPVASSSAAAGGGRP
GLGRGRNSSKGLPQPTISFDGIYANVRMVHILTSVVGSKCEVQVKNGGIYEGVFKTYSPKCDLVLDAAHE
KSTESSSGPKREEIMESVLFKCSDFVVVQFKDTDSSYARRDAFTDSALSAKVNGEHKEKDLEPWDAGELT
ASEELELENDVSNGWDPNDMFRYNEENYGVVSTYDSSLSSYTVPLERDNSEEFLKREARANQLAEEIESS
AQYKARVALENDDRSEEEKYTAVQRNCSDREGHGPNTRDNKYIPPGQRNREVLSWGSGRQSSPRMGQPGP
GSMPSRAASHTSDFNPNAGSDQRVVNGGVPWPSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSR
PSRPPSHPSAHGSPAPVSTMPKRMSSEGPPRMSPKAQRHPRNHRVSAGRGSMSSGLEFVSHNPPSEAAAP
PVARTSPAGGTWSSVVSGVPRLSPKTHRPRSPRQSSIGNSPSGPVLASPQAGIIPAEAVSMPVPAASPTP
ASPASNRALTPSIEAKDSRLQDQRQNSPAGSKENVKASETSPSFSKADNKGMSPVVSEHRKQIDDLKKFK
NDFRLQPSSTSESMDQLLSKNREGEKSRDLIKDKTEASAKDSFIDSSSSSSNCTSGSSKTNSPSISPSML
SNAEHKRGPEVTSQGVQTSSPACKQEKDDREEKKDTTEQVRKSTLNPNAKEFNPRSFSQPKPSTTPTSPR
PQAQPSPSMVGHQQPAPVYTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYRAGKVPNMPQQR
QDQHHQSTMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPNQPLVQHVPHYQSQHPHVYSPVIQGNARMM
APPAHAQPGLVSSSAAQFGAHEQTHAMYACPKLPYNKETSPSFYFAISTGSLAQQYAHPNAALHPHTPHP
QPSATPTGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQSS
FPAAQQTVFTIHPSHVQPAYTTPPHMAHVPQAHVQSGMVPSHPTAHAPMMLMTTQPPGGPQAALAQSALQ
PIPVSTTAHFPYMTHPSVQAHHQQQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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