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Report for CCDS71775.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71775.1 Public Mus musculus 6 Sftpb 23 108 98 CCDS HistoryNCBI Gene:20388Re-query CCDS DB by CCDS ID:71775.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71775.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000183018.7 ENSMUSP00000138695.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000183018.7Link to Ensembl Protein Viewer:ENSMUSP00000138695.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000183018Re-query CCDS DB by Protein ID:ENSMUSP00000138695
Original member NCBI NM_001282071.2 NP_001269000.1 Updated not alive Link to Nucleotide Sequence:NM_001282071.2Link to Protein Sequence:NP_001269000.1Re-query CCDS DB by Nucleotide ID:NM_001282071Re-query CCDS DB by Protein ID:NP_001269000
Current member NCBI NM_001282071.3 NP_001269000.1 Accepted alive Link to Nucleotide Sequence:NM_001282071.3Link to Protein Sequence:NP_001269000.1Re-query CCDS DB by Nucleotide ID:NM_001282071Re-query CCDS DB by Protein ID:NP_001269000Link to BLAST:NP_001269000.1

Chromosomal Locations for CCDS 71775.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 72304625 72304688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72304992 72305119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72305628 72305699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72305809 72305934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72306811 72306975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72307154 72307243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72309826 72309940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72310635 72310795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72312353 72312433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72312870 72312932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGGCCAAGTCGCACCTACTGCAGTGGCTACTGCTGCTTCCTACCCTCTGCTGCCCAGGTGCAGCTATCA
CGTCGGCCTCATCCCTGGAGTGTGCACAAGGCCCTCAATTCTGGTGCCAAAGCCTGGAGCATGCAGTGCA
GTGCAGAGCCCTGGGGCACTGCCTGCAGGAAGTCTGGGGGCATGCAGGAGCTAATGACCTGTGCCAAGAG
TGTGAGGATATTGTCCACCTCCTCACAAAGATGACCAAGGAAGATGCTTTCCAGGAAGCAATCCGGAAGT
TCCTGGAACAAGAATGTGATATCCTTCCCTTGAAGCTGCTTGTGCCCCGGTGTCGCCAAGTGCTTGATGT
CTACCTGCCCCTGGTTATTGACTACTTCCAGAGCCAGATTAACCCCAAAGCCATCTGCAATCATGTGGGC
CTGTGCCCACGTGGGCAGGCTAAGCCAGAACAGAATCCAGGGATGCCGGATGCCGTTCCAAACCCTCTGC
TGGACAAGCTGGTCCTCCCTGTGCTGCCAGGAGCCCTCTTGGCAAGGCCTGGGCCTCACACTCAGGACTT
CTCTGAGCAACAGCTCCCCATTCCCCTGCCCTTCTGCTGGCTTTGCAGAACTCTGATCAAGCGGGTTCAA
GCCGTGATCCCCAAGTGCCTGGCTGAGCGCTACACAGTTCTCCTGCTAGACGCACTGCTGGGCCGTGTGG
TGCCCCAGCTAGTCTGTGGCCTTGTCCTCCGATGTTCCACTGAGGATGCCATGGGCCCTGCCCTCCCTGC
TGTGGAGCCTCTGATAGAAGAATGGCCACTACAGGACACTGAGTGCCATTTCTGCAAGTCTGTGATCAAC
CAGGCCTGGAACACCAGTGAACAGGCTATGCCACAGGCAATGCACCAGGCCTGCCTTCGCTTCTGGCTAG
ACAGGCAAAAGTGTGAACAGTTTGTGGAACAGCACATGCCCCAGCTGCTGGCCCTGGTGCCTAGGAGCCA
GGATGCCCACATCACCTGCCAGGCCCTTGGCGTATGTGAGGCCCCGGCTAGCCCTCTGCAGTGCTTCCAA
ACCCCACACCTCTGA

Translation (354 aa):
MAKSHLLQWLLLLPTLCCPGAAITSASSLECAQGPQFWCQSLEHAVQCRALGHCLQEVWGHAGANDLCQE
CEDIVHLLTKMTKEDAFQEAIRKFLEQECDILPLKLLVPRCRQVLDVYLPLVIDYFQSQINPKAICNHVG
LCPRGQAKPEQNPGMPDAVPNPLLDKLVLPVLPGALLARPGPHTQDFSEQQLPIPLPFCWLCRTLIKRVQ
AVIPKCLAERYTVLLLDALLGRVVPQLVCGLVLRCSTEDAMGPALPAVEPLIEEWPLQDTECHFCKSVIN
QAWNTSEQAMPQAMHQACLRFWLDRQKCEQFVEQHMPQLLALVPRSQDAHITCQALGVCEAPASPLQCFQ
TPHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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