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Report for CCDS25156.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25156.1 Public Mus musculus 11 Slfn2 23 108 98 CCDS HistoryNCBI Gene:20556Re-query CCDS DB by CCDS ID:25156.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25156.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038038.7 ENSMUSP00000035562.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038038.7Link to Ensembl Protein Viewer:ENSMUSP00000035562.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000038038Re-query CCDS DB by Protein ID:ENSMUSP00000035562
Original member Current member NCBI NM_011408.1 NP_035538.1 Accepted alive Link to Nucleotide Sequence:NM_011408.1Link to Protein Sequence:NP_035538.1Re-query CCDS DB by Nucleotide ID:NM_011408Re-query CCDS DB by Protein ID:NP_035538Link to BLAST:NP_035538.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035538.1 378 Q9Z0I6 378 100% 0 0

Chromosomal Locations for CCDS 25156.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 83065294 83065343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83069247 83070333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1137 nt):
ATGGGTACTAGACTTGAGGCAACTGAGCAAAGCAACCACAGAACTCAGAGGAATGACATTCAGCTGGAAA
ATGCAAAGGCTGCTGGGAAAATGGGCATCAGTGTTGATCTGGAAGCCAAATATGCTAAGCTGGGTCTAAA
TCTCGGAGCAATCACTTTTGGAGAGAAGGATAGGAAGAAAATGAAGAATTCTCACCTCAGAAAACAGGAG
AATGCAAACATCTCTCTAGCTGTATGTGCTCTCCTGAATTCGGGAGGTGGAGCAATCAAGGTTAAAATTG
AAAATGAAAATTATAGTCTCACTAGGGATGGCCTGGGACTAGATTTGGAAGCCTCTCTTTGTAAATGTCT
GCCCTTTGTCCAGTGGCACCTGGACTTCACGGAGAGCGAAGGCTACATTTATATCTACGTGAAATCGTGG
AGCCAAGAAATCTTTGGGCTGCCTATTGGCACCCTAAGAACCAATTTGTATGTAAGGAGCATGTCATCTT
CTGTACAAGTGAGCGCCGCTGCTGCCCTGGAATTTCTCCAGGACCTGGAGGAAACTGGAGGGAGACCCTG
TGTCAGACCAGAGTTGCCTGCAAGCATAGCCTTCCCTGAAGTGGAAGGAGAATGGCACCTGGAGGATTTG
GCTGCTGCATTGTTTAACAGGACAGAATTTCAGTACGAGGAAACTTTCCCCTTTACCAGATCCAGATATG
TTGAAGTTACATTGCTTTCAGCGAAACGCCTGCGAAAACGCATCAAAGAGCTCCTCCCTCAAACTGTTTC
TGCTTTTGCAAACACGGATGGGGGATTTTTGTTCATTGGTTTGGATGGCAAAACCCAGCAAATTATTGGT
TTTGAAGCAGAGAAGAGCGATCTCGTGCTTCTAGAGAGTGAAATAGAAAAGCACATCCGGCAGCTGCCTG
TCACTCACTTCTGTGAGGAGAAGGAGAAGATCAAGTACACGTGCAAATTCATCGAAGTGCACAAATCCGG
AGCTGTGTGTGCATATGTGTGTGCGCTCAGAGTGGAGAGATTCTGCTGTGCAGTATTCGCTGCAGAGCCC
GAGTCCTGGCATGTGGAAGGCGGCTGTGTGAAGAGGTTTACCACAGAGGAATGGGTGAAACTCCAGATGA
ATGCCCCATCAGGTTGA

Translation (378 aa):
MGTRLEATEQSNHRTQRNDIQLENAKAAGKMGISVDLEAKYAKLGLNLGAITFGEKDRKKMKNSHLRKQE
NANISLAVCALLNSGGGAIKVKIENENYSLTRDGLGLDLEASLCKCLPFVQWHLDFTESEGYIYIYVKSW
SQEIFGLPIGTLRTNLYVRSMSSSVQVSAAAALEFLQDLEETGGRPCVRPELPASIAFPEVEGEWHLEDL
AAALFNRTEFQYEETFPFTRSRYVEVTLLSAKRLRKRIKELLPQTVSAFANTDGGFLFIGLDGKTQQIIG
FEAEKSDLVLLESEIEKHIRQLPVTHFCEEKEKIKYTCKFIEVHKSGAVCAYVCALRVERFCCAVFAAEP
ESWHVEGGCVKRFTTEEWVKLQMNAPSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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