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Report for CCDS27479.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27479.1 Public Mus musculus 15 Sntb1 23 108 98 CCDS HistoryNCBI Gene:20649Re-query CCDS DB by CCDS ID:27479.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27479.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039769.12 ENSMUSP00000041294.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039769.12Link to Ensembl Protein Viewer:ENSMUSP00000041294.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000039769Re-query CCDS DB by Protein ID:ENSMUSP00000041294
Original member NCBI NM_016667.3 NP_057876.1 Updated not alive Link to Nucleotide Sequence:NM_016667.3Link to Protein Sequence:NP_057876.1Re-query CCDS DB by Nucleotide ID:NM_016667Re-query CCDS DB by Protein ID:NP_057876
Current member NCBI NM_016667.4 NP_057876.1 Accepted alive Link to Nucleotide Sequence:NM_016667.4Link to Protein Sequence:NP_057876.1Re-query CCDS DB by Nucleotide ID:NM_016667Re-query CCDS DB by Protein ID:NP_057876Link to BLAST:NP_057876.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057876.1 537 Q99L88-1 537 100% 0 0

Chromosomal Locations for CCDS 27479.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 55639335 55639427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55642655 55642845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55647857 55648053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55676304 55676443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55749188 55749395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55792034 55792250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55906024 55906591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1614 nt):
ATGGCGGTAGCGGCAGCGGCTGTGGCTGCGCCGGCTGGCGGTGGAGGCGCCCGGGCGCAGCGGAGCGGAC
TGCTGGAAGTTTTGGTGCGGGATCGCTGGCATAAAGTTCTGGTGAACTTGAGCGAGGACGCCCTGGTGTT
GAGCTGCGAGGAGGGCGCTGCGGCGTACAACGGCATAGGGGCTGCCACCAATGGTTCGTTCTGCAGGGGC
TCCGGGACCGGGCACCCGGTCCCCGGTGTCGCTCAAGCCCCGGACTCTCCCGCCGGGGTCCGCACCGCCT
TCACCGACCTCCCGGAGCAGGTACCTGAGTCCATCTCAAACCAGAAGAGGGGCGTGAAGGTGCTGAAGCA
GGAGCTGGGCGGGCTGGGCATTAGCATCAAAGGGGGCAAGGAAAACAAGATGCCCATACTCATCAGCAAG
ATCTTCAAGGGGCTGGCAGCGGATCAGACCCAAGCCCTGTATGTGGGCGATGCCATCCTGTCGGTGAACG
GAGCAGACCTGCGGGACGCCACCCACGACGAGGCAGTGCAGGCATTGAAGCGCGCAGGCAAGGAAGTGCT
GCTGGAAGTGAAGTATATGAGAGAAGCCACACCTTACGTGAAGAAAGGGTCCCCGGTGTCTGAGATTGGA
TGGGAAACACCTCCACCTGAGTCTCCAAGATTAGGGGGTGGCTCTGCAGAGCCTCTGTCATCCCAGTCCT
TCTCCTTCCATAGAGACCGGAAAAGCATCCCCCTCAAGATGTGTTATGTCACCCGGAACATGACCTTGGC
TGACCCTGAAAACAGGCAGCTAGAAATTCACTCGCCAGATGCTAAGCACACAGTGATTCTGAGAAGTAAG
GACTCTGCCACTGCCCAAGCCTGGTTCAGCGCCATTCATTCCAACGCTGGTGACTTGCTGACCCGTGTGG
TTGCTGACATCAGGGAGCAGCTGGGGAAAACAGGCATTGCTGGCAGTCGTGAGATCAGGCATCTTGGCTG
GCTTGCAGAAAAGGTGCCCGGAGAGAGTGAGAAACAGTGGAAACCAGCCCTGGTTGTTCTGACTGAGAAA
GATCTTTTAATCTACGACAGCATGCCACGGAGGAAAGAGGCCTGGTTCAGCCCGGTGCATTCGTATCCAC
TTCTTGCTACCAGGCTGGTCCATTCAGGTCCAGGGAAAGGATCACCCCAGGCTGGGATGGATCTGTCCTT
TGCAACACGAACTGGCACCAAGCAAGGAATTGAAACACATCTCTTCAGGGCAGAGATCAGCAGGGACCTC
TCCCACTGGACAAGAAGCATAGTACAGGGGTGCCACAATTCAGCGGAGCTCACTGCCGAAATCACCACAG
CCTGCACCTACAGAAACCAGGAATGCCGCTTGACCATACATTATGACAATGGATTTTCTATTTCCACTGA
GCCTCAGGATGGTGCCTTCCCCAAGACAATCATACAGTCCCCTTATGAGAAGCTCAAAATGTCTTCGGAT
GATGGAATCAGGATGCTCTATTTAGACTTTGGAGGCAAAGAAGGAGAGATTCAACTGGACCTTCACTCCT
GCCCCAAGCCGATCGTTTTCATCATCCACTCCTTTCTGTCTGCTAAGATAACACGACTGGGCTTGGTGGC
CTGA

Translation (537 aa):
MAVAAAAVAAPAGGGGARAQRSGLLEVLVRDRWHKVLVNLSEDALVLSCEEGAAAYNGIGAATNGSFCRG
SGTGHPVPGVAQAPDSPAGVRTAFTDLPEQVPESISNQKRGVKVLKQELGGLGISIKGGKENKMPILISK
IFKGLAADQTQALYVGDAILSVNGADLRDATHDEAVQALKRAGKEVLLEVKYMREATPYVKKGSPVSEIG
WETPPPESPRLGGGSAEPLSSQSFSFHRDRKSIPLKMCYVTRNMTLADPENRQLEIHSPDAKHTVILRSK
DSATAQAWFSAIHSNAGDLLTRVVADIREQLGKTGIAGSREIRHLGWLAEKVPGESEKQWKPALVVLTEK
DLLIYDSMPRRKEAWFSPVHSYPLLATRLVHSGPGKGSPQAGMDLSFATRTGTKQGIETHLFRAEISRDL
SHWTRSIVQGCHNSAELTAEITTACTYRNQECRLTIHYDNGFSISTEPQDGAFPKTIIQSPYEKLKMSSD
DGIRMLYLDFGGKEGEIQLDLHSCPKPIVFIIHSFLSAKITRLGLVA


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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