NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39024.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39024.1 Public Mus musculus 5 Srpk2 23 108 98 CCDS HistoryNCBI Gene:20817Re-query CCDS DB by CCDS ID:39024.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39024.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088392.8 ENSMUSP00000085734.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088392.8Link to Ensembl Protein Viewer:ENSMUSP00000085734.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000088392Re-query CCDS DB by Protein ID:ENSMUSP00000085734
Original member NCBI NM_001359174.1 NP_001346103.1 Updated not alive Link to Nucleotide Sequence:NM_001359174.1Link to Protein Sequence:NP_001346103.1Re-query CCDS DB by Nucleotide ID:NM_001359174Re-query CCDS DB by Protein ID:NP_001346103
Current member NCBI NM_001359174.2 NP_001346103.1 Accepted alive Link to Nucleotide Sequence:NM_001359174.2Link to Protein Sequence:NP_001346103.1Re-query CCDS DB by Nucleotide ID:NM_001359174Re-query CCDS DB by Protein ID:NP_001346103Link to BLAST:NP_001346103.1
Original member NCBI NM_009274.2 NP_033300.2 Updated not alive Link to Nucleotide Sequence:NM_009274.2Link to Protein Sequence:NP_033300.2Re-query CCDS DB by Nucleotide ID:NM_009274Re-query CCDS DB by Protein ID:NP_033300
Current member NCBI NM_009274.3 NP_033300.2 Accepted alive Link to Nucleotide Sequence:NM_009274.3Link to Protein Sequence:NP_033300.2Re-query CCDS DB by Nucleotide ID:NM_009274Re-query CCDS DB by Protein ID:NP_033300Link to BLAST:NP_033300.2

Chromosomal Locations for CCDS 39024.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 23507536 23507720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23513952 23514044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23514634 23514703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23518416 23518523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23518619 23518719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23524148 23524615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23525496 23525745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23526790 23526815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23527897 23528062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23540375 23540481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23545523 23545610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23546980 23547067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23548455 23548563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23565114 23565265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23616327 23616364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2049 nt):
ATGTCAGTTAACTCTGAGAAGTCGTCCTCTTCAGAAAGGCCGGAGCCTCAACAGAAAGCTCCTTTAGTTC
CTCCTCCTCCACCACCACCACCGCCACCACCACTGCCAGACCCCGCACCCCCAGAGCCAGAGGAGGAGAT
TCTGGGGTCAGATGATGAGGAGCAGGAGGACCCCGCAGATTACTGCAAAGGTGGCTATCATCCAGTGAAA
ATTGGAGATCTCTTCAATGGTCGATATCATGTCATTAGAAAGCTAGGATGGGGGCACTTTTCTACTGTAT
GGCTGTGCTGGGATATGCAAGGGAAAAGATTTGTTGCAATGAAAGTTGTAAAAAGTGCCCAGCATTATAC
AGAGACAGCCTTGGATGAAATTAAACTACTCAAATGCGTTCGAGAAAGTGACCCCAGTGACCCAAACAAA
GACATGGTAGTTCAGCTAATTGATGACTTCAAGATCTCAGGCATGAATGGGATACATGTCTGCATGGTCT
TTGAAGTACTTGGTCACCATCTCCTCAAATGGATCATCAAATCCAACTATCAAGGCCTCCCAGTACGTTG
TGTGAAGAGTATCATTCGACAGGTCCTTCAAGGGTTAGATTATCTACACAGTAAGTGCAAGATAATTCAC
ACCGACATAAAGCCGGAAAACATCTTGATGTGTGTGGATGACGCTTACGTGAGAAGAATGGCAGCCGAAG
CCACGGAGTGGCAGAAAGCAGGTGCTCCTCCTCCCTCTGGGTCTGCAGTGAGTACGGCTCCACAGCAAAA
ACCTATAGGAAAAATATCTAAAAACAAAAAGAAAAAGCTGAAAAAGAAACAGAAGAGACAGGCTGAGTTG
CTGGAGAAACGCCTACAGGAGATTGAGGAATTGGAGCGAGAAGCCGAAAGGAAAATCCTAGAGGAGAACA
TCACCTCTGCAGAAGCTTCCGGGGAGCAGCAGGATGGAGAGTACCAGCCGGAGGTGACACTGAAAGCAGC
CGACTTAGAGGACACAACTGAGGAAGAGACAGCAAAGGATAATGGTGAAGTTGAAGACCAGGAAGAGAAA
GAAGATGCAGAGAAGGAGAACGCGGAGAAGGATGAAGATGATGTTGAACAGGAACTTGCAAACTTAGACC
CTACCTGGGTGGAGTCCCCGAAAGCCAATGGCCATATTGAAAATGGCCCGTTCTCACTGGAGCAGCAGCT
GGAGGATGAAGAGGACGATGAAGATGACTGTGCAAATCCCGAGGAGTATAACCTCGATGAGCCAAATGCA
GAGAGTGATTACACGTATAGCAGCTCCTATGAACAATTCAATGGTGAATTGCCAAATGGACAACATAAGA
CTTCAGAGTTTCCCACACCGTTGTTTTCTGGGCCCTTAGAACCTGTGGCCTGTGGCTCTGTGATTTCAGA
GGGATCGCCACTTACCGAGCAGGAGGAAAGCAGTCCCTCCCATGACAGAAGCAGGACAGTTTCAGCCTCT
AGTACTGGAGATTTGCCAAAAACAAAAACCCGGGCGGCTGACCTGTTGGTGAACCCTCTGGATCCACGGA
ATGCAGATAAAATTAGAGTAAAAATTGCTGACCTGGGAAATGCTTGTTGGGTGCATAAACATTTCACAGA
GGATATCCAGACACGTCAGTATAGGTCCATAGAGGTTTTAATAGGAGCAGGCTACAGCACACCTGCAGAC
ATTTGGAGTACAGCTTGCATGGCATTTGAGCTCGCCACAGGAGACTATTTGTTCGAACCGCATTCTGGGG
AAGACTATTCCAGAGATGAAGACCACATAGCCCACATCATAGAGCTGCTAGGCAGTATCCCAAGGCACTT
TGCTCTGTCTGGAAAATATTCTCGGGAATTCTTCAATCGCAGAGGAGAACTGCGGCACATCACCAAGCTG
AAGCCCTGGAGCCTCTTTGATGTACTTGTGGAAAAGTATGGCTGGCCCCATGAAGATGCTGCACAATTTA
CAGATTTCCTGATCCCAATGTTAGAGATGGTTCCAGAAAAACGAGCCTCAGCTGGCGAATGCCTTCGACA
TCCTTGGTTGAATTCTTAG

Translation (682 aa):
MSVNSEKSSSSERPEPQQKAPLVPPPPPPPPPPPLPDPAPPEPEEEILGSDDEEQEDPADYCKGGYHPVK
IGDLFNGRYHVIRKLGWGHFSTVWLCWDMQGKRFVAMKVVKSAQHYTETALDEIKLLKCVRESDPSDPNK
DMVVQLIDDFKISGMNGIHVCMVFEVLGHHLLKWIIKSNYQGLPVRCVKSIIRQVLQGLDYLHSKCKIIH
TDIKPENILMCVDDAYVRRMAAEATEWQKAGAPPPSGSAVSTAPQQKPIGKISKNKKKKLKKKQKRQAEL
LEKRLQEIEELEREAERKILEENITSAEASGEQQDGEYQPEVTLKAADLEDTTEEETAKDNGEVEDQEEK
EDAEKENAEKDEDDVEQELANLDPTWVESPKANGHIENGPFSLEQQLEDEEDDEDDCANPEEYNLDEPNA
ESDYTYSSSYEQFNGELPNGQHKTSEFPTPLFSGPLEPVACGSVISEGSPLTEQEESSPSHDRSRTVSAS
STGDLPKTKTRAADLLVNPLDPRNADKIRVKIADLGNACWVHKHFTEDIQTRQYRSIEVLIGAGYSTPAD
IWSTACMAFELATGDYLFEPHSGEDYSRDEDHIAHIIELLGSIPRHFALSGKYSREFFNRRGELRHITKL
KPWSLFDVLVEKYGWPHEDAAQFTDFLIPMLEMVPEKRASAGECLRHPWLNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH