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Report for CCDS24877.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24877.1 Public Mus musculus 11 Aurkb 23 108 98 CCDS HistoryNCBI Gene:20877Re-query CCDS DB by CCDS ID:24877.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24877.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021277.5 ENSMUSP00000021277.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021277.5Link to Ensembl Protein Viewer:ENSMUSP00000021277.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021277Re-query CCDS DB by Protein ID:ENSMUSP00000021277
Original member Current member EBI ENSMUST00000108666.7 ENSMUSP00000104306.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108666.7Link to Ensembl Protein Viewer:ENSMUSP00000104306.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108666Re-query CCDS DB by Protein ID:ENSMUSP00000104306
Original member NCBI NM_011496.2 NP_035626.1 Updated not alive Link to Nucleotide Sequence:NM_011496.2Link to Protein Sequence:NP_035626.1Re-query CCDS DB by Nucleotide ID:NM_011496Re-query CCDS DB by Protein ID:NP_035626
Current member NCBI NM_011496.3 NP_035626.1 Accepted alive Link to Nucleotide Sequence:NM_011496.3Link to Protein Sequence:NP_035626.1Re-query CCDS DB by Nucleotide ID:NM_011496Re-query CCDS DB by Protein ID:NP_035626Link to BLAST:NP_035626.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035626.1 345 O70126 345 100% 0 0

Chromosomal Locations for CCDS 24877.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69045961 69046008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69047785 69047887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69047972 69048041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69048174 69048365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69048506 69048644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69048731 69048879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69050302 69050476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69050900 69051061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGGCTCAGAAGGAGAACGCCTACCCGTGGCCCTACGGCTCAAAGACGTCTCAGTCTGGCCTGAACACGT
TGTCCCAGAGAGTCCTACGGAAGGAGCCCGCCACGACATCTGCGCTTGCTCTCGTGAACCGGTTCAACAG
CCAGTCCACAGCTGCCCCTGGCCAGAAGTTGGCTGAGAACAAGAGTCAGGGCTCCACTGCCTCGCAAGGA
TCCCAGAACAAGCAGCCTTTCACTATTGACAACTTTGAGATTGGGCGTCCTTTGGGCAAAGGCAAATTTG
GAAACGTGTACTTGGCTCGGGAGAAGAAGAGCCGTTTCATCGTGGCACTCAAGATCCTCTTCAAGTCTCA
GATTGAGAAGGAGGGGGTAGAGCACCAGCTTCGCCGAGAGATCGAAATCCAGGCGCACCTGAAACATCCC
AACATCCTTCAACTCTACAACTACTTCTACGACCAGCAGAGGATCTACTTAATCCTGGAATACGCCCCTC
GCGGGGAACTCTACAAGGAACTGCAGAAGAGTCGGACCTTCGATGAGCAGCGGACTGCCACGATCATGGA
GGAACTGTCAGATGCCCTGACCTACTGCCACAAGAAGAAGGTAATTCACAGAGACATAAAGCCGGAGAAC
CTGCTGTTAGGTCTGCAGGGAGAACTGAAGATTGCAGACTTTGGCTGGTCGGTGCATGCCCCATCCCTGA
GGAGGAAGACCATGTGCGGCACGCTGGACTATCTGCCCCCAGAGATGATTGAGGGGCGCATGCATAATGA
AATGGTAGATCTATGGTGCATCGGGGTGCTCTGCTATGAACTGATGGTGGGGAACCCACCCTTCGAGAGC
CCTAGCCACAGTGAGACGTATCGTCGGATTGTCAAGGTGGACCTGAAGTTCCCCTCTTCTGTGCCTTCGG
GCGCCCAGGACCTCATCTCCAAGCTGCTCAAACATAACCCCTGGCAACGGCTGCCCCTGGCGGAGGTTGC
AGCTCACCCTTGGGTCCGGGCCAACTCAAGGAGGGTTCTGCCTCCCTCTGCCCTTTAG

Translation (345 aa):
MAQKENAYPWPYGSKTSQSGLNTLSQRVLRKEPATTSALALVNRFNSQSTAAPGQKLAENKSQGSTASQG
SQNKQPFTIDNFEIGRPLGKGKFGNVYLAREKKSRFIVALKILFKSQIEKEGVEHQLRREIEIQAHLKHP
NILQLYNYFYDQQRIYLILEYAPRGELYKELQKSRTFDEQRTATIMEELSDALTYCHKKKVIHRDIKPEN
LLLGLQGELKIADFGWSVHAPSLRRKTMCGTLDYLPPEMIEGRMHNEMVDLWCIGVLCYELMVGNPPFES
PSHSETYRRIVKVDLKFPSSVPSGAQDLISKLLKHNPWQRLPLAEVAAHPWVRANSRRVLPPSAL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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