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Report for CCDS52967.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52967.1 Public Mus musculus 9 Ulk4 23 108 98 CCDS HistoryNCBI Gene:209012Re-query CCDS DB by CCDS ID:52967.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52967.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171923.7 ENSMUSP00000131342.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171923.7Link to Ensembl Protein Viewer:ENSMUSP00000131342.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171923Re-query CCDS DB by Protein ID:ENSMUSP00000131342
Original member Current member NCBI NM_177589.3 NP_808257.2 Accepted alive Link to Nucleotide Sequence:NM_177589.3Link to Protein Sequence:NP_808257.2Re-query CCDS DB by Nucleotide ID:NM_177589Re-query CCDS DB by Protein ID:NP_808257Link to BLAST:NP_808257.2

Chromosomal Locations for CCDS 52967.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 120964545 120964608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120966397 120966482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121044686 121044871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121073918 121074016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121081564 121081730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121103547 121103652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121126450 121126498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121141834 121141926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121144987 121145131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121145335 121145386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121152090 121152184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121152278 121152329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121156973 121157029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121157166 121157287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121160270 121160403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121168184 121168311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121188218 121188400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121192634 121192795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121204724 121204807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121208157 121208264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121244366 121244444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121248925 121248971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121250862 121251043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121252653 121252713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121255117 121255221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121256298 121256394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121257079 121257148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121257300 121257418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121258729 121258821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121260009 121260084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121261908 121261991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121262568 121262669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121263629 121263791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121266208 121266347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121266514 121266613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 121272873 121273010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3828 nt):
ATGGAAAACTTCGTCTTGTATGAGGAGATTGGCAGAGGAAGCAGGACTGTCGTATATAAGGGGCGCCGGA
AAGGAACCATCAACTTTGTAGCCATCCTTTGTACTGAGAAGTGCAAACGGCCTGAAATAACCAACTGGGT
CCGCCTCACCCATGAAATAAAACACAAGAACATTGTAACTTTTCACGAGTGGTACGAGACCAGCAATCAT
CTCTGGTTGGTGGTGGAGCTTTGCACAGGTGGTTCTCTAGAAACCGTGATTGCTCAGGACGAAAACCTCC
CAGAAGATGTCGTGAGAGAGTTTGGGGTGGACCTGGTCACAGGGCTGCACCATCTCCACAGGCTGGGCAT
CCTCTTTTGTGACCTTTCTCCTGGGAAGATTCTCTTGGAAGGGCCTGGAACACTGAAGTTCAGCAATTTC
TGCCTGGCCAAGGTGGCAGGGGAGAGTCTGGAGGAGTTCTTTGCTTTGGTGGCAGCAGAAGAAGGAGGTG
GTGACAGTGGAGAGAACGCACTGAAGAAAAGCATGAAGACCCGAGTCAGAGGCTCTCTGATCTATGCGGC
TCCGGAAATCGTGAAGGGGACTGAATTCTCCGTTACCAGTGACCTCTGGTCTTTGGGCTGTCTACTTTAT
GAAATGTTTTCAGGGAAACCCCCATTCTTCTCAGAAACGGTGTCAGAACTCGTTGAGAAGATTCTGTATG
AAGACCCATTGCCACCAATCCCAAAAGACTCTTCATTCCCCAAAGCATCCTCAGATTTCCTTAACTTGCT
GGACGGATTGCTGCAGAAGGATCCTCAGAAAAGATTCTCCTGGGAGGGAGTTCTGCAGCACCCATTCTGG
AAAGACGCCCTGCGGGGAGAAGACTCAGGCTGGGCCTCCGAGGACTCCCCCTTCAGCAGAAACGTCATGG
AGTGTTCTGGACCGCATGATTCCAGAGAGCTTTTGCAGAGCCCTAAGAATGGACAAGCCAAAGGGCAGAA
GGCAGCTCATCGGCTCAGCCAGTCTTTCAGGCTAGAAAACCCAACTGAGCTGAGGCCCAAGAGCATCATG
GGAGGCCAGCTGAATGAATCCATATTTCTCCTCAGTTCACGGCCCACTCCAAGGACTAGTGCCATGGTGG
AATTAAATCCTGGTGAGGGTGAGGACCCCAGCTCACCTCAGAAGACTTCTCCCTTATCCAAGATGACAAG
CGGGCACCTGAGCCAGGGGGCCCTGGAGTCCCAGATGAGAGAGCTGATCTACACGGACTCGGATCTTGTG
ATCACCCCAATTATAGACAATCCGAAGATAATGAAACAACCTGCAATCAAGTTTGATCCAAAAATCTTGC
ACCTACCAGCATATTCTGTGGAGAAGTTGCTGGTCCTCAAGGACCAAGACTGGAATGACTTCCTGCAGCA
GGTGTGCTCCCAGATCGACTCCAGCGAGAAGAGCACAGGGGCGCTGCGGGCCAAGCTGAACCTCCTGTGC
TACCTGTGTGTGGTGGCCACGCACAAGGAGGTGGCCACCAGGCTGCTTCACTCCCCGCTGTTCCAGTTGC
TAATCCAGCACCTGCGGATAGCTCCTAACTGGGATATACGGTCCAAGGTTGCTCGGGTGGTCGGCATGCT
GGCCTTGCACACAACCGAACTTCAGGAAAATGTGCCTGTTATCGAGGCGATCACACTCTTAACTGAATTA
ATCCGGGAAAATTTCAGGAGTGGCAAACTGAAGCAGTGCCTCCTGCCCACCCTTGGACAGCTTCTCTACC
TTGTAGCCACCCAGGAAGAAAAAAATCAGCACTCCAGGGATTGCTGGGCCGTCCCCCTGGCTGCATACAC
TGTGCTTATGAGGTGCCTCCGGGAAGGGGAGGAACGGGTTGTCAATCACATGGCTGCGAAGATTATCGAG
AATGTTTGCACGACGTTTTCTGCCCAGGCGCAGGGCTTCACAACCGGGGAGATTGGGCCTGTCCTGTGGC
ACCTCTTTAGACACTCCACCGTGGACGCCCTGCGGATAACCGCGATATCGGCCCTGTGCAGGATCACACG
GCAGTCTCCCACCGCCTTCCAGAATGTCATCGAGAAGGTGGGTCTCAATGCAGTCATCAGCTCCCTGGCC
TCTGCCATCTGCAAAGTGCAGCAGTACATGCTGACCCTGTTCACAGCCATGCTGTCCTGTGGGATTCATC
TCCAGCGGCTGATCCAAGAGAAGGACTTCGTCTCTACAGTCATCCGCTTACTTGATAGTCCGTCCACTCC
CATCAGAGCCAAAGCCTTCCTGGTGCTGCTGTACATCTTGATTCATAACCGGGACATGCTGCTGCTGAGC
TGCCAAGCCAGGCTGGTGATGTACATCGAGAGAGACAGCAGAAAGACCTCCCCAGGCAAGGAGCAGCAGA
GTGGGAATGAGTACCTGGCCAGGTGCCTGGACCTCCTCATCCAGCACATGGTACAGGAGCCACCTCGGAT
CCTAGGCGACATTCTCAACGCCCTGGCAAACGTGTCCGGCCGGAAGCACCCATCCACGGTCCAGGGGAAG
CAGCTGAAGATGTGTCTCCCCATGATGCCTGTGGTGCTTCACCTGGTGATGTCACAGGTATTTCGACCTC
AAGTTGTGACAGAAGAGTTTCTCTTCAGCTACGGAACTATTCTTAGTCACATTAAGTCAATTGACTTGGG
GGAAACGAACATAGACGGAGCCATAGGCATCGTGGCATCTGAGGAGTTTATCAAGGTCACCCTGTCGGCA
TTCGAAGCAGTGATCCAGTACCCGGTTCTGCTGGCCGACTACCGCTCGACGGTCATGGATTATATTTTGC
CGCCCTTGGTCTCCTTGGTTCAAAGCCAGAATGTGGAATGGAGACTCTTCAGCTTGCGGTTGCTCTCAGA
GACCACAACCCTGCTGGTGAGCCAGGAGCCGGAGGACGGTGATGAAGAGGCCAGTTGCGATTCTGACAGC
AGTCTTCTGGCGCTCATCAGAGATGAGCTGCTACCCCAGTATGAGCACATCCTCATGGAGCCTGACCCCG
TTCCTGCCTATGCGCTGAAGCTGCTCGTCGCCATGACGGAACACAACCCCGCTTTCACCAGGCTTGTGGA
AGAAAGCAAACTGGTCCCGCTCATTTTTGAAGTAATTTTGGAGCATCAGGAGAGCATTCTGGGTAATACC
ATGCAGAGTGTGATTGCGTTGCTCAACAATCTGGTTGCCTACAAAGACTCAAACATGCAGCTGCTTTATG
AACAAGGACTCGTTGGTCATGTCTGTAACATGTTCACAGAAACTGCCACTCTGTGCTTGGACAGGGACAA
TAAAACCAACACGGAGCCGGCGTCCACACTGCTGGCCTCCCTGCTCGACATCCTACTGGGCATGCTGACC
TACACTTCTCGAATCGTCCGGCAGGCTTTGCAGGTCCAGAAGTCAGGCTCAAGAGGGGACACACAGGCTG
CAGAGGACCTGCTGCTTCTCAGCAAACCACTCACAGACCTCATCAGCCTGCTTATCCCACTGCTTCCCAG
CGAGGACCCTGAGATCTCCGAGGTCTCATCCAAGTGCCTGTCCATCCTGGTGCAGCTGTATGGAGGCGAG
AACCCCGAGAGCTTGTCCCCAGAGAACATGGTGACCTTTGCCAACCTCCTGATGACCAAGGAGGACCCCA
AGGACCAGAAGCTTCTGCTGAGGATCCTCAAGAGGATGGTAACGTCCAATGAGAGGCTCTTGGAAAGCCT
CAAGAACACCGGCAGCCTTCTGCAGGCCCTGGAGCGCCTGGCTCCAGCTCACAGCTCACCCGTCGACACT
ATCGTGGCTTCCTTGGCCCTGGAACTCCTCCAGGCAGTTGGGCATTAG

Translation (1275 aa):
MENFVLYEEIGRGSRTVVYKGRRKGTINFVAILCTEKCKRPEITNWVRLTHEIKHKNIVTFHEWYETSNH
LWLVVELCTGGSLETVIAQDENLPEDVVREFGVDLVTGLHHLHRLGILFCDLSPGKILLEGPGTLKFSNF
CLAKVAGESLEEFFALVAAEEGGGDSGENALKKSMKTRVRGSLIYAAPEIVKGTEFSVTSDLWSLGCLLY
EMFSGKPPFFSETVSELVEKILYEDPLPPIPKDSSFPKASSDFLNLLDGLLQKDPQKRFSWEGVLQHPFW
KDALRGEDSGWASEDSPFSRNVMECSGPHDSRELLQSPKNGQAKGQKAAHRLSQSFRLENPTELRPKSIM
GGQLNESIFLLSSRPTPRTSAMVELNPGEGEDPSSPQKTSPLSKMTSGHLSQGALESQMRELIYTDSDLV
ITPIIDNPKIMKQPAIKFDPKILHLPAYSVEKLLVLKDQDWNDFLQQVCSQIDSSEKSTGALRAKLNLLC
YLCVVATHKEVATRLLHSPLFQLLIQHLRIAPNWDIRSKVARVVGMLALHTTELQENVPVIEAITLLTEL
IRENFRSGKLKQCLLPTLGQLLYLVATQEEKNQHSRDCWAVPLAAYTVLMRCLREGEERVVNHMAAKIIE
NVCTTFSAQAQGFTTGEIGPVLWHLFRHSTVDALRITAISALCRITRQSPTAFQNVIEKVGLNAVISSLA
SAICKVQQYMLTLFTAMLSCGIHLQRLIQEKDFVSTVIRLLDSPSTPIRAKAFLVLLYILIHNRDMLLLS
CQARLVMYIERDSRKTSPGKEQQSGNEYLARCLDLLIQHMVQEPPRILGDILNALANVSGRKHPSTVQGK
QLKMCLPMMPVVLHLVMSQVFRPQVVTEEFLFSYGTILSHIKSIDLGETNIDGAIGIVASEEFIKVTLSA
FEAVIQYPVLLADYRSTVMDYILPPLVSLVQSQNVEWRLFSLRLLSETTTLLVSQEPEDGDEEASCDSDS
SLLALIRDELLPQYEHILMEPDPVPAYALKLLVAMTEHNPAFTRLVEESKLVPLIFEVILEHQESILGNT
MQSVIALLNNLVAYKDSNMQLLYEQGLVGHVCNMFTETATLCLDRDNKTNTEPASTLLASLLDILLGMLT
YTSRIVRQALQVQKSGSRGDTQAAEDLLLLSKPLTDLISLLIPLLPSEDPEISEVSSKCLSILVQLYGGE
NPESLSPENMVTFANLLMTKEDPKDQKLLLRILKRMVTSNERLLESLKNTGSLLQALERLAPAHSSPVDT
IVASLALELLQAVGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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