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Report for CCDS15675.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15675.1 Public Mus musculus 2 Taf3 23 108 98 CCDS HistoryNCBI Gene:209361Re-query CCDS DB by CCDS ID:15675.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15675.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026888.10 ENSMUSP00000026888.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026888.10Link to Ensembl Protein Viewer:ENSMUSP00000026888.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000026888Re-query CCDS DB by Protein ID:ENSMUSP00000026888
Original member Current member NCBI NM_027748.3 NP_082024.2 Accepted alive Link to Nucleotide Sequence:NM_027748.3Link to Protein Sequence:NP_082024.2Re-query CCDS DB by Nucleotide ID:NM_027748Re-query CCDS DB by Protein ID:NP_082024Link to BLAST:NP_082024.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082024.2 932 Q5HZG4-1 932 100% 0 0

Chromosomal Locations for CCDS 15675.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 9916349 9916466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9918103 9918209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9921052 9921301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9940927 9941009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 9951114 9952945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10042427 10042669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10048235 10048400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2799 nt):
ATGTGCGAGAGTTACTCTAGGTCGTTGTTGAGGGTCTCGGTGGCGCAGATCTGCCAGGCGCTGGGCTGGG
ACTCGGTGCAGCTCAGCGCCTGCCACCTCCTCACCGACGTCCTGCAGCGCTATCTGCAGCAGCTGGGCCG
GGGCTGCCATCGGTACTCTGAACTCTATGGCCGAACAGACCCCATTTTGGATGATGTTGGTGAAGCCTTC
CAACTTATGGGAGTTAATCTGCATGAACTAGAAGACTATATTCATAATATTGAACCTGTCACTTTCCCAC
ATCAAATTCCTTCATTTCCTGTTAGCAAGAACAATGTCCTTCAGTTTCCTCAGCCCGGAAGTAAAGATGC
AGAGGAAAGAAAAGACTACATTCCGGATTACCTTCCCCCCATCGTGTCTTCTCAAGAAGAGGAGGAAGAG
GAACAGGTGCCCACTGATGGGGGCACCTCAGCAGAAGCCATGCAGGTGCCCTTGGAAGAAGATGATGAGA
TGGAGGAGGAGGAAGTCATCAATGATGAGAACTTCTTGGGTAAGAGGCCACTGGACAGTCCTGAAGTGGA
AGAAATGCCCTCCATGAAGCGCCCACGACTCCTGAGCACTAAAGGGGACTCCCTAGATGTTGTGTTGTTA
GAAGCACGAGAACCCCTCAGCTCTATAAACCCACAGAAGACCCCACCAGTGCTCTCTCCTGTGCGTGTCC
AGGACAGGGCTGATCTGGCCCCTCCATCACCACAGCCTCCCATGCTGGCTCCATTTGCAAAGTCACAACT
ACCAATTGCAAAGCCGTTAGAAACAAAGTCGTTTACACCAAAAACAAAGACTAAAGCTAGCTCTCCAGGT
CAGAAAACTAAGTCACCCAAGGCTGCCCTATCACCAGCAAGGCTTGGAAGTCCTATTCGGTCACCAAAAA
CCATCCCAAAAGAAAAGAAGTCACCTGGACGCTCCAAGAGCCCCAAGAGTCCTAAGAGCCCCAAGATTGT
AGCTCATGTTCCCCAAACCCCTGTCAGACCTGAAACACCAAATAGGACCCCTTCAGCCATGGTGGTTGAA
AAAACTGTTAAAGAGACCATCCCAGTGATGAAACCAACACAGACTCCCCCAGAAGTTGTGAAACTGAACA
TTGAAATGCAGCCGAAAAAGCCTGTGGTGACAGACAAAACCATCGATGACTCCATCGATGCTGTGATCGC
ACGTGCCTGTGCAGAGCGGGAGCCAGACCCTTTCGAGTTTTCTTCCGGATCGGAATCGGAAGGAGACACT
TTTACAAGTCCTAAGAGGATTTCAGGCTCAGAGTGCGCCACTCCAAAAGCCTCCACTTCCTCCAATAACT
TCACCAAGTCCCTGGCCACTCCTCTGCCTCTCTCCAGCGGAACCTCAAGTTCAGATAACTCGTGGACAAT
GGATGCCTCTATTGATGAGGTGGTACGGAAGGCAAAGCTGGGAGCCCCTTCCAACATGCCTCCCACCTTC
CCATATATCTCTTCTCCCTCAATTTCTCCTCCCACTCCTGAGCCTCTACACAAGGGGTATGAGGAGAAAG
CCAAGCTGCCTTCGTCTGTGGATGTAAAGAAAAAGTTGAAAAAAGAACTGAAGACTAAGTTGAAAAAGAA
AGAAAAGCAGCGAGACAGAGAGAGGGAGAGAGAGAGAAACAAAGAAAGAAGCAAAGAGAAAGATAAAATG
AGAGAGAGGGAGAAGGAGAAGGAGGCTGGAAAGGAACTTAAGTACCCGTGGAGGGAGCTGATGAAAGACG
AAGATTCTGATCCCTATAAGTTTAAAATCAAAGAATTTGAAGACATTGATGCTGCGAAAGTGCGATTGAA
AGATGGGATCGTGAGGAGAGAGCGAGAGAAACATAAGGACAAGAAGAAAGATCGAGAAAGAAGCAAGCGG
GAGAAAGATAAGCGAGAAAGGGAAAGGCTTAAAGAAAAAAACAGAGAAGACAAGATAAAGGCCCCTCCAA
CACAGCTGGTGTTGCCCCCAAAAGAAATGGCACTGCCTTTGTTCAGCCCTTCAGCAGTGAGGGTCCCGGC
CATGCTGCCGGCCTTCTCACCAATGCTCCCAGAAAAACTGTTTGAGGAAAAAGAGAAGCCCAAGGAGAAA
GAAAGGAAAAAGGACAAAAAGGAGAAGAAGAAGAAGAAAGAGAAGGAGAAAGAAAAGGAGAAGAAAGAGA
GGGAGAGGGAGAAGGAGAGAAGGGAGAGAGAGAAGAGAGAGAAGGAGAAGGAGAAGCACAAACATGAGAA
GATAAAAGTGGAGCCTGTCATCCCTGCCCCAAGTCCAGTTATCCCCAGGTTGACTCTGCGAGTTGGCGCT
GGCCAGGACAAGATTGTTATCAGCAAGGTGGTACCAGCCCCGGAGGCTAAGCCCGCTCCTTCTCTGAACA
GACCCAAAACCCCACCTCCAGCCCCAGTCCCTATTCCTGTGCGAGTGAGCCCTACTCCCCTGCAGCCACC
ACTCCTCACCCAGGCTGCAGTGTGCCCAGCCCTGATGCCATCCCCAGCTCCCGCCCTCTCTGGAATAGGG
AGTGCCAAAGCCCCCGTGAGGAGCGTCGTGACTGAGACGGTCAGCACTTATGTGATCCGTGATGAGTGGG
GCAATCAGATCTGGATCTGTCCAGGGTGCAACAAGCCTGATGACGGGAGCCCGATGATTGGCTGTGACGA
CTGTGACGATTGGTACCACTGGCCCTGTGTGGGAATCATGGCTGCTCCTCCAGAAGAGATGCAGTGGTTC
TGCCCGAAGTGTGCCAACAAGATAAAGAAAGACAAGAAGCACAAGAAGAGGAAGCACCGTGCGCACTGA

Translation (932 aa):
MCESYSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRGCHRYSELYGRTDPILDDVGEAF
QLMGVNLHELEDYIHNIEPVTFPHQIPSFPVSKNNVLQFPQPGSKDAEERKDYIPDYLPPIVSSQEEEEE
EQVPTDGGTSAEAMQVPLEEDDEMEEEEVINDENFLGKRPLDSPEVEEMPSMKRPRLLSTKGDSLDVVLL
EAREPLSSINPQKTPPVLSPVRVQDRADLAPPSPQPPMLAPFAKSQLPIAKPLETKSFTPKTKTKASSPG
QKTKSPKAALSPARLGSPIRSPKTIPKEKKSPGRSKSPKSPKSPKIVAHVPQTPVRPETPNRTPSAMVVE
KTVKETIPVMKPTQTPPEVVKLNIEMQPKKPVVTDKTIDDSIDAVIARACAEREPDPFEFSSGSESEGDT
FTSPKRISGSECATPKASTSSNNFTKSLATPLPLSSGTSSSDNSWTMDASIDEVVRKAKLGAPSNMPPTF
PYISSPSISPPTPEPLHKGYEEKAKLPSSVDVKKKLKKELKTKLKKKEKQRDRERERERNKERSKEKDKM
REREKEKEAGKELKYPWRELMKDEDSDPYKFKIKEFEDIDAAKVRLKDGIVRREREKHKDKKKDRERSKR
EKDKRERERLKEKNREDKIKAPPTQLVLPPKEMALPLFSPSAVRVPAMLPAFSPMLPEKLFEEKEKPKEK
ERKKDKKEKKKKKEKEKEKEKKEREREKERREREKREKEKEKHKHEKIKVEPVIPAPSPVIPRLTLRVGA
GQDKIVISKVVPAPEAKPAPSLNRPKTPPPAPVPIPVRVSPTPLQPPLLTQAAVCPALMPSPAPALSGIG
SAKAPVRSVVTETVSTYVIRDEWGNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWF
CPKCANKIKKDKKHKKRKHRAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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