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Report for CCDS49097.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49097.1 Public Mus musculus 12 Plekhh1 23 108 98 CCDS HistoryNCBI Gene:211945Re-query CCDS DB by CCDS ID:49097.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49097.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039928.6 ENSMUSP00000049460.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039928.6Link to Ensembl Protein Viewer:ENSMUSP00000049460.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000039928Re-query CCDS DB by Protein ID:ENSMUSP00000049460
Original member Current member EBI ENSMUST00000219956.1 ENSMUSP00000151747.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000219956.1Link to Ensembl Protein Viewer:ENSMUSP00000151747.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000219956Re-query CCDS DB by Protein ID:ENSMUSP00000151747
Original member Current member NCBI NM_181073.3 NP_851418.2 Accepted alive Link to Nucleotide Sequence:NM_181073.3Link to Protein Sequence:NP_851418.2Re-query CCDS DB by Nucleotide ID:NM_181073Re-query CCDS DB by Protein ID:NP_851418Link to BLAST:NP_851418.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_851418.2 1356 Q80TI1-1 1356 100% 0 0

Chromosomal Locations for CCDS 49097.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 79040540 79040662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79049192 79049254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79050266 79050415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79053596 79053679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79054489 79054570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79054660 79055414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79061972 79062053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79062535 79062626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79064119 79064269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79064448 79064575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79065661 79065771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79066621 79066707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79067074 79067235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79067962 79068042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79068372 79068554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79069019 79069127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79069904 79070016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79070788 79070964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79071297 79071394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79072736 79072913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79073399 79073554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79074590 79074690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79075401 79075542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79076454 79076596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79076706 79076835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79078648 79078734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79078960 79079106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79079438 79079593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4071 nt):
ATGGCAGAAGTCAAGGTGGAGGTGGCCAGCATAGACTGGCAGAAGCGATGCCTATCCCTGGAAACACAGC
TTTTCCGCTTCCGCCTTCAGGCCAGCAAGATAAGGGAGCTGCTGGCTGACAAGATGCAGGAGCTGGAGCA
GAGGCTGCTGGAGGCTGAGCAGAGAGCTGAAAATGCAGAAACTCAGGTGGGTGTGATGGAAGAGAAGATA
AAACTGTCCAATCTGAAGAGTGTGGACTCCACAGGTACCTTGCACCAAAAGTACCAAGAATTGCTGAGAG
CCGTTCAAGGCAAGGACGAGCTCATCAGCCAGCTGCAGGCACAGCTGGAGAAGCAGAAGCAGACAAGAGC
TGAAGAAGCCAAAATTGTTCAAGAAAAAGCTGCAAAGATCAAGGAATGGGTGACAGTAAAGTTAGCAGAG
CTTGAAATGGAAAATCAACAGCTGAAGACTTGTAACCAGCAGCTAGTGGAGCAGGTGGCGGCCCTTCAGG
ATGCTCTTGAGGATCTTCGAATGACGCCTTCAGAGGAGCTGCTAGTTGTTCCTGAGGGAACCCCAGAGAG
GGATCCTGTCCCTTCAGGGCCCAGTGACCAGCCTGTGGAGCAGGACAGTAATCCCCATACCCAGATTTTG
AAGGTGGCTGTGCCTACACCTTCTCTGGGTACCCTGCAGAGCAGGGACTCCCTGTCAGAAGCCAGAAGTC
TTGAGGATTTGCGTTTCAGCATGGTCCATCCTGGGGAAACAGCAGAGGCCAAGACCCTTCAGTCTCATCT
TCAGAAAGAGGGCTCTCCCAGTCAGCTGTGCATGAAGCCTGGCAACCCCAAGCATGGGTCAGCCTCTTAC
AGAGAAAGTCTGGTCACTGCTCAGGGAGGGACATTCCCTGGGACCAAGACCTCTGCCAGGGAAGGTGGCC
CTGGTAGTAGCCTGACCCTGCCAAAGGTGCGGGCTCCCAGCATCCCTCGGGACAGCTTCCAAGTGGCCAA
AAGGCACCACAGTCAGCCCCAGGTAGGCCCTGGGCATTGTGACCACGTGGTAAGCATTGAGATTGGGGCG
CTGTCAGCCCTCCACTCACCTGGCTCCTCCAAGTCTGAAGCCAGAGCTAAAGTCCGGGAAGAAGCAGAGA
AGATGGAGATGGAGGCGCTGCCTCCATCAGGGAAGCAGGAAGAGAGAGAGAGCCTCAAGTCCCGCAGAGG
TGAACTGGAGGACGTGGAACTGGAGAACAAGCCACCTACACCCCCACTGCACAGGTTTCCATCTTGGGAG
AGCAGGATCTACGCGATGGCCACATCAGGCATGCAGCTGTCAGAAGTGTCATCACGACGAAGTAATGCTG
CCTGCTACGCTTCGGGGCCGTCTGCCCTTGCATTCCCTGGAGCTTTCTCTGGCCTTGTCTACAAGAATGT
CACTGTGCCTGTCTACACAGCACTGAAGGGGAAAGCCACGCAGATCAGCAATGTGCCTTTTGTGGATGAG
TCCTCCGGGTCTGATGATGACTGCGGCTCTCAAGCAAGTTTCCGGATGTCAGTCCCCTGCTCTGAGTACA
GGAAGACCAGTGGACTAGGCAGCCCCCGGGCCATCAAGAGAGGGGTCTCCATGTCCTCACTGAGCTCTGA
GGGTGACTATGCTATCCCTCCTGACGCCTGCTCACTGGACAGTGACTACTCAGAGCCTGAGCACAAACTC
CAGCGTACTTCATCGTACTCCACCGACGGGGAGGCACTGGAAAAGTCAGGCTACCTGCTGAAAATGGGGA
GCCGGGTGAAGACATGGAAGAGGCGCTGGTTTGTCCTGAGACAGGGACAAATCCTATACTACAAGTCTCC
GAGTGACGTCATCCGGAAACCTCAGGGTCAAGTGGATCTGAATTCTCACTGCCAGATTGTTCGAGAGGAG
GAAGCACAGACGTTTCAGCTCATCTCTGGAAACAAAACCTACTACCTAACAGCAGAGTCCCCCAGCCTCC
TGGAAGAATGGATCCGTGTCCTACAGAGCCTGCTGAAGGTGCAGGTCACTGGCCCTCCAGCCCTGCATCA
AGGGGGCACCAAGCCTACTGTGAAGGGCTGGCTGACCAAGGTAAAGCATGGCCACTCCAAGCTGGTCTGG
TGCGCCCTGGTTGGGAAAACCTTCTACTACTACCGGAGCCACGAGGACAAGAGACCCCTGGGCTGCCTAC
CTGTGCAGGACGCTCACATAGAGGAAGTAGATCGGTCCTGTGACTCGGACGAAGACTATGAAGCTGGAGG
AACCGGGCGCTTGCTGTCCTCCCACTGCACGCTGGTGATCCACCCCCCGGAGCACAGCCCCACCTACCTC
CTCATCGGCACCAAGCATGAAAAGGATACGTGGCTTTACCACCTCACAGTGGCTGCAGGTGGCAGCAATG
CCAAGGTGGGCACTGTCTATGAGCAGCTCATTGGGAAACTGATGGATGGTGAGGGTAACCCAGACTCCCC
ACTCTGGAGGCACCCCATGCTGTGCTACAGCCAAGAAGGGCTATGCGCCTCCCTTACCACCTTGCCCTCC
GAGGCCCTGCAGACGGAGGCCCTGAAGCTCTTCAAGTCCTGCCAGCTCTTCATCAATGTGCCGGTGGAAG
CCGCCTCAGTAGACTACCATGTGTCCCTGGCTCAGACGGCCCTGCAGGTGTGCCTCGTTCACCCTGAGCT
ACAGAGTGAGATCTACTGCCAGCTCATGAAGCAGATCAGCTGTCGCCCGCCTCAGAAGTACTCTCTTATG
CAATGCTGGCAGCTCCTGGCTCTGTGTGCCCCACTCTTCCTGCCTCAGCACCACTTCCTCTGGTATGTCA
AACAGCAGCTCCAACGCCATGCAGACCCCAGAAGTGAAACTGGTCAGTATGCTATATACTGCCAGCGAGC
CGTGGAGCGAACCCTGCAGACAGGAGAACGGGAGGCCAGGCCATCACGGATGGAAGTAGTGTCCATCTTG
CTACGAAACCCCTTCCATCACTCCTTACCCTTCAGCATCCCTGTGCACTTTGCCAATGGAACTTACCAGG
TGGTTGGTTTTGATGGCTCCTCCACAGTGGATGAGTTCCTCCAGCGGCTGAACCAGGAAACGGGCATGAG
GAAGCCCTCCCAGTCTGGCTTTGCCCTCTTTACGGATGATCCTTCTGGCAGGGACCTGGAGCACTGTCTT
CAAGGGCGTGTCAAGATCTGTGACGCCATCTCCAAGTGGGAGCAAACGCTGAAGGAGCTGCATCCTGGGA
AGTCTGAGGGTGGGACACGAGTCGTGAAGCTGATGTACAAGAACAGGCTGTACTTTCGAAGTCAAGTCAA
AGGGGAGACAGAGAGAGAGCGGCTGCTACTTGCCTTCCAAGCCAGTGGAGAAATAGTGGCAGGAAGATTT
CCAGTCACCAAGGAACTGGCCCTTGAAATGGCTGCCTTGATGGCCCAGGTGGAGTATGGGGACTTGGAGA
AGCCTACGCTGCCAGGCCCTGGGGGTACACCTCCCACCAAAGCCCAGCATCTCCTTCAGCAGGTCCTTGA
CAGGTTTTACCCAAGGCGCTATCGAAATGGAGCACCCCCTGAGCAGCTGAGGCACCTGGCAGACATGATG
GCCACCAAGTGGGCAGCGTTACAAGGCTGCTCCCCTCCCGAGTGCATCCGCATCTACCTGACTGTGGCTC
GGAAATGGCCTCTCTTCGGGGCTAAGCTCTTCGCTGCTCAGCCTGCCCAGCTGTCTCCTAAGGAGAACAC
TGTGGTGTGGATTGCTGTGAATGAGGATGGTGTCAGCATCCTGGACCACCGCACCATGCAGGTGAACATC
ACTTATCCCTACTCTTCAGTGACAACGTTCGGTGGCTGCAGGGATGACTTCATGCTTGTGATTAGATCCA
TTCCAGACCAGAGCTCTGGAAAAACCCGTATTGACAAGTTGACCTTCCGAATGCCTGCTCCCAAGATTAC
AGAAACTACCTTAATGATGGCCAGCTACATGAACCACTGTTCTGCAACTGTGAACCTATCAGCCAAGCTC
CCTGCAGCCCGCCAGCCCCGAGACCTGGATGGACAGTTCTTTGCTTCTGTTTCCTGCACTAAGGGGTCAG
CTTTGCTGTGA

Translation (1356 aa):
MAEVKVEVASIDWQKRCLSLETQLFRFRLQASKIRELLADKMQELEQRLLEAEQRAENAETQVGVMEEKI
KLSNLKSVDSTGTLHQKYQELLRAVQGKDELISQLQAQLEKQKQTRAEEAKIVQEKAAKIKEWVTVKLAE
LEMENQQLKTCNQQLVEQVAALQDALEDLRMTPSEELLVVPEGTPERDPVPSGPSDQPVEQDSNPHTQIL
KVAVPTPSLGTLQSRDSLSEARSLEDLRFSMVHPGETAEAKTLQSHLQKEGSPSQLCMKPGNPKHGSASY
RESLVTAQGGTFPGTKTSAREGGPGSSLTLPKVRAPSIPRDSFQVAKRHHSQPQVGPGHCDHVVSIEIGA
LSALHSPGSSKSEARAKVREEAEKMEMEALPPSGKQEERESLKSRRGELEDVELENKPPTPPLHRFPSWE
SRIYAMATSGMQLSEVSSRRSNAACYASGPSALAFPGAFSGLVYKNVTVPVYTALKGKATQISNVPFVDE
SSGSDDDCGSQASFRMSVPCSEYRKTSGLGSPRAIKRGVSMSSLSSEGDYAIPPDACSLDSDYSEPEHKL
QRTSSYSTDGEALEKSGYLLKMGSRVKTWKRRWFVLRQGQILYYKSPSDVIRKPQGQVDLNSHCQIVREE
EAQTFQLISGNKTYYLTAESPSLLEEWIRVLQSLLKVQVTGPPALHQGGTKPTVKGWLTKVKHGHSKLVW
CALVGKTFYYYRSHEDKRPLGCLPVQDAHIEEVDRSCDSDEDYEAGGTGRLLSSHCTLVIHPPEHSPTYL
LIGTKHEKDTWLYHLTVAAGGSNAKVGTVYEQLIGKLMDGEGNPDSPLWRHPMLCYSQEGLCASLTTLPS
EALQTEALKLFKSCQLFINVPVEAASVDYHVSLAQTALQVCLVHPELQSEIYCQLMKQISCRPPQKYSLM
QCWQLLALCAPLFLPQHHFLWYVKQQLQRHADPRSETGQYAIYCQRAVERTLQTGEREARPSRMEVVSIL
LRNPFHHSLPFSIPVHFANGTYQVVGFDGSSTVDEFLQRLNQETGMRKPSQSGFALFTDDPSGRDLEHCL
QGRVKICDAISKWEQTLKELHPGKSEGGTRVVKLMYKNRLYFRSQVKGETERERLLLAFQASGEIVAGRF
PVTKELALEMAALMAQVEYGDLEKPTLPGPGGTPPTKAQHLLQQVLDRFYPRRYRNGAPPEQLRHLADMM
ATKWAALQGCSPPECIRIYLTVARKWPLFGAKLFAAQPAQLSPKENTVVWIAVNEDGVSILDHRTMQVNI
TYPYSSVTTFGGCRDDFMLVIRSIPDQSSGKTRIDKLTFRMPAPKITETTLMMASYMNHCSATVNLSAKL
PAARQPRDLDGQFFASVSCTKGSALL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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